Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SCN4AP35499 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
SCN4AP35499 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 AC106886.4-201ENST00000623557 2502 ntBASIC18.06■□□□□ 0.48
SCN4AP35499 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.05■□□□□ 0.48
SCN4AP35499 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN4AP35499 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
SCN4AP35499 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN4AP35499 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 FO393412.1-201ENST00000619841 382 ntBASIC18.05■□□□□ 0.48
SCN4AP35499 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN4AP35499 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN4AP35499 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
SCN4AP35499 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN4AP35499 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.05■□□□□ 0.48
SCN4AP35499 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 AC239868.1-201ENST00000369385 493 ntBASIC18.05■□□□□ 0.48
SCN4AP35499 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC18.05■□□□□ 0.48
SCN4AP35499 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.05■□□□□ 0.48
SCN4AP35499 RN7SL81P-201ENST00000493781 261 ntBASIC18.05■□□□□ 0.48
SCN4AP35499 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC18.05■□□□□ 0.48
SCN4AP35499 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC18.05■□□□□ 0.48
SCN4AP35499 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC18.05■□□□□ 0.48
SCN4AP35499 RNF146-211ENST00000609447 607 ntTSL 4 BASIC18.05■□□□□ 0.48
SCN4AP35499 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN4AP35499 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN4AP35499 AC025262.2-201ENST00000623975 1056 ntBASIC18.05■□□□□ 0.48
SCN4AP35499 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN4AP35499 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC18.04■□□□□ 0.48
SCN4AP35499 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SCN4AP35499 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN4AP35499 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
SCN4AP35499 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN4AP35499 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.04■□□□□ 0.48
SCN4AP35499 AL627422.1-201ENST00000434104 580 ntBASIC18.04■□□□□ 0.48
SCN4AP35499 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC18.04■□□□□ 0.48
SCN4AP35499 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC18.04■□□□□ 0.48
SCN4AP35499 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC18.04■□□□□ 0.48
SCN4AP35499 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SCN4AP35499 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.04■□□□□ 0.48
SCN4AP35499 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN4AP35499 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN4AP35499 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SCN4AP35499 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN4AP35499 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC18.04■□□□□ 0.48
SCN4AP35499 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SCN4AP35499 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.03■□□□□ 0.48
SCN4AP35499 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SCN4AP35499 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.03■□□□□ 0.48
SCN4AP35499 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC18.03■□□□□ 0.48
SCN4AP35499 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.03■□□□□ 0.48
SCN4AP35499 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC18.03■□□□□ 0.48
SCN4AP35499 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC18.03■□□□□ 0.48
SCN4AP35499 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC18.03■□□□□ 0.48
SCN4AP35499 AC026410.1-201ENST00000507366 1101 ntBASIC18.03■□□□□ 0.48
SCN4AP35499 MIR5196-201ENST00000578146 115 ntBASIC18.03■□□□□ 0.48
SCN4AP35499 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 AC105137.3-201ENST00000617588 984 ntBASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms