Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SHMT2P34897 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.41■□□□□ 0.06
SHMT2P34897 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.41■□□□□ 0.06
SHMT2P34897 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.41■□□□□ 0.06
SHMT2P34897 AC135586.1-201ENST00000539323 574 ntBASIC15.41■□□□□ 0.06
SHMT2P34897 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.41■□□□□ 0.06
SHMT2P34897 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.41■□□□□ 0.06
SHMT2P34897 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.41■□□□□ 0.06
SHMT2P34897 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.41■□□□□ 0.06
SHMT2P34897 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.41■□□□□ 0.06
SHMT2P34897 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.41■□□□□ 0.06
SHMT2P34897 AL109936.8-201ENST00000641772 604 ntBASIC15.41■□□□□ 0.06
SHMT2P34897 FAM45BP-202ENST00000592932 1624 ntBASIC15.41■□□□□ 0.06
SHMT2P34897 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.41■□□□□ 0.06
SHMT2P34897 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SHMT2P34897 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.41■□□□□ 0.06
SHMT2P34897 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SHMT2P34897 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.41■□□□□ 0.06
SHMT2P34897 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SHMT2P34897 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.41■□□□□ 0.06
SHMT2P34897 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SHMT2P34897 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.41■□□□□ 0.06
SHMT2P34897 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.41■□□□□ 0.06
SHMT2P34897 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.4■□□□□ 0.06
SHMT2P34897 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.4■□□□□ 0.06
SHMT2P34897 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.4■□□□□ 0.06
SHMT2P34897 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SHMT2P34897 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SHMT2P34897 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.4■□□□□ 0.06
SHMT2P34897 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SHMT2P34897 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.4■□□□□ 0.06
SHMT2P34897 Z97205.2-201ENST00000564697 1639 ntBASIC15.4■□□□□ 0.06
SHMT2P34897 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.4■□□□□ 0.06
SHMT2P34897 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
SHMT2P34897 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.4■□□□□ 0.06
SHMT2P34897 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SHMT2P34897 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.4■□□□□ 0.06
SHMT2P34897 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.4■□□□□ 0.06
SHMT2P34897 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SHMT2P34897 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.4■□□□□ 0.06
SHMT2P34897 AC114501.2-201ENST00000439631 535 ntBASIC15.4■□□□□ 0.06
SHMT2P34897 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.4■□□□□ 0.06
SHMT2P34897 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.4■□□□□ 0.06
SHMT2P34897 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
SHMT2P34897 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.4■□□□□ 0.06
SHMT2P34897 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
SHMT2P34897 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.4■□□□□ 0.06
SHMT2P34897 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.4■□□□□ 0.06
SHMT2P34897 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SHMT2P34897 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHMT2P34897 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SHMT2P34897 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.39■□□□□ 0.05
SHMT2P34897 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHMT2P34897 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SHMT2P34897 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
SHMT2P34897 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
SHMT2P34897 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.39■□□□□ 0.05
SHMT2P34897 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHMT2P34897 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SHMT2P34897 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHMT2P34897 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHMT2P34897 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.39■□□□□ 0.05
SHMT2P34897 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHMT2P34897 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHMT2P34897 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.39■□□□□ 0.05
SHMT2P34897 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.39■□□□□ 0.05
SHMT2P34897 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms