Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC18.38■□□□□ 0.53
COL4A5P29400 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A5P29400 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC18.38■□□□□ 0.53
COL4A5P29400 AL603764.1-201ENST00000636452 321 ntBASIC18.38■□□□□ 0.53
COL4A5P29400 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL4A5P29400 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A5P29400 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A5P29400 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A5P29400 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A5P29400 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC18.38■□□□□ 0.53
COL4A5P29400 KLF2P1-201ENST00000447438 1042 ntBASIC18.38■□□□□ 0.53
COL4A5P29400 RPL18P13-201ENST00000478088 569 ntBASIC18.38■□□□□ 0.53
COL4A5P29400 HLA-J-204ENST00000495278 958 ntBASIC18.38■□□□□ 0.53
COL4A5P29400 SNORD3B-2-202ENST00000571722 791 ntBASIC18.38■□□□□ 0.53
COL4A5P29400 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 WT1-AS_6.1-201ENST00000614919 121 ntBASIC18.38■□□□□ 0.53
COL4A5P29400 HLA-C-210ENST00000640219 976 ntBASIC18.38■□□□□ 0.53
COL4A5P29400 AL805961.1-201ENST00000642026 753 ntBASIC18.38■□□□□ 0.53
COL4A5P29400 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
COL4A5P29400 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 AL596087.1-201ENST00000400979 1969 ntBASIC18.37■□□□□ 0.53
COL4A5P29400 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A5P29400 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL4A5P29400 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 AC009090.5-201ENST00000624886 2285 ntBASIC18.37■□□□□ 0.53
COL4A5P29400 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL4A5P29400 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 AC010141.1-201ENST00000411585 623 ntBASIC18.37■□□□□ 0.53
COL4A5P29400 AC026434.2-201ENST00000506094 1078 ntBASIC18.37■□□□□ 0.53
COL4A5P29400 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL4A5P29400 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A5P29400 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
COL4A5P29400 AC138894.2-201ENST00000602838 371 ntBASIC18.37■□□□□ 0.53
COL4A5P29400 AL136301.1-201ENST00000615830 422 ntBASIC18.37■□□□□ 0.53
COL4A5P29400 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL4A5P29400 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A5P29400 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A5P29400 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A5P29400 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.36■□□□□ 0.53
COL4A5P29400 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.36■□□□□ 0.53
COL4A5P29400 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 AL157414.3-201ENST00000624276 1954 ntBASIC18.36■□□□□ 0.53
COL4A5P29400 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A5P29400 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A5P29400 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 HNRNPA1P41-201ENST00000397777 928 ntBASIC18.36■□□□□ 0.53
COL4A5P29400 AL353637.1-201ENST00000451571 732 ntBASIC18.36■□□□□ 0.53
COL4A5P29400 TUBB8P8-201ENST00000458717 1058 ntBASIC18.36■□□□□ 0.53
COL4A5P29400 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
COL4A5P29400 RN7SL163P-201ENST00000583100 276 ntBASIC18.36■□□□□ 0.53
COL4A5P29400 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
COL4A5P29400 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 REXO1L5P-201ENST00000622260 2098 ntBASIC18.36■□□□□ 0.53
COL4A5P29400 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL4A5P29400 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A5P29400 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL4A5P29400 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A5P29400 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL4A5P29400 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.35■□□□□ 0.53
COL4A5P29400 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A5P29400 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms