Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.88■□□□□ 0.45
SMARCA1P28370 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
SMARCA1P28370 RN7SL837P-201ENST00000463010 287 ntBASIC17.88■□□□□ 0.45
SMARCA1P28370 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.88■□□□□ 0.45
SMARCA1P28370 AP001063.1-201ENST00000568332 529 ntBASIC17.88■□□□□ 0.45
SMARCA1P28370 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.88■□□□□ 0.45
SMARCA1P28370 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.88■□□□□ 0.45
SMARCA1P28370 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.88■□□□□ 0.45
SMARCA1P28370 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.88■□□□□ 0.45
SMARCA1P28370 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
SMARCA1P28370 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.88■□□□□ 0.45
SMARCA1P28370 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 AC063926.2-201ENST00000623766 1308 ntBASIC17.88■□□□□ 0.45
SMARCA1P28370 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SMARCA1P28370 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
SMARCA1P28370 KRT8P44-201ENST00000441609 1350 ntBASIC17.88■□□□□ 0.45
SMARCA1P28370 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SMARCA1P28370 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.88■□□□□ 0.45
SMARCA1P28370 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.87■□□□□ 0.45
SMARCA1P28370 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
SMARCA1P28370 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SMARCA1P28370 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.87■□□□□ 0.45
SMARCA1P28370 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
SMARCA1P28370 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
SMARCA1P28370 AL512384.1-201ENST00000406683 331 ntBASIC17.87■□□□□ 0.45
SMARCA1P28370 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.87■□□□□ 0.45
SMARCA1P28370 INE1-201ENST00000456273 945 ntBASIC17.87■□□□□ 0.45
SMARCA1P28370 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
SMARCA1P28370 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.87■□□□□ 0.45
SMARCA1P28370 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SMARCA1P28370 CLUHP6-201ENST00000580789 941 ntBASIC17.87■□□□□ 0.45
SMARCA1P28370 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 AC126365.1-201ENST00000578585 1514 ntBASIC17.87■□□□□ 0.45
SMARCA1P28370 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SMARCA1P28370 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.87■□□□□ 0.45
SMARCA1P28370 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.86■□□□□ 0.45
SMARCA1P28370 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.86■□□□□ 0.45
SMARCA1P28370 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SMARCA1P28370 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.86■□□□□ 0.45
SMARCA1P28370 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.86■□□□□ 0.45
SMARCA1P28370 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SMARCA1P28370 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.86■□□□□ 0.45
SMARCA1P28370 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 AC007389.4-201ENST00000454674 793 ntBASIC17.86■□□□□ 0.45
SMARCA1P28370 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.86■□□□□ 0.45
SMARCA1P28370 SAMD11P1-201ENST00000571429 661 ntBASIC17.86■□□□□ 0.45
SMARCA1P28370 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.86■□□□□ 0.45
SMARCA1P28370 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.86■□□□□ 0.45
SMARCA1P28370 AC005252.2-201ENST00000624630 1141 ntBASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms