Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.25■□□□□ 0.67
COL5A3P25940 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL5A3P25940 Z97180.1-201ENST00000445173 988 ntBASIC19.25■□□□□ 0.67
COL5A3P25940 FGFR3P1-201ENST00000449999 601 ntBASIC19.25■□□□□ 0.67
COL5A3P25940 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC19.25■□□□□ 0.67
COL5A3P25940 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC19.25■□□□□ 0.67
COL5A3P25940 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 CENPX-208ENST00000584347 799 ntTSL 2 BASIC19.25■□□□□ 0.67
COL5A3P25940 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
COL5A3P25940 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL5A3P25940 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
COL5A3P25940 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL5A3P25940 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A3P25940 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC19.24■□□□□ 0.67
COL5A3P25940 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A3P25940 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC19.24■□□□□ 0.67
COL5A3P25940 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.24■□□□□ 0.67
COL5A3P25940 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
COL5A3P25940 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC19.24■□□□□ 0.67
COL5A3P25940 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A3P25940 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
COL5A3P25940 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A3P25940 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC19.24■□□□□ 0.67
COL5A3P25940 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC19.24■□□□□ 0.67
COL5A3P25940 AL132994.2-201ENST00000603120 687 ntBASIC19.24■□□□□ 0.67
COL5A3P25940 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.24■□□□□ 0.67
COL5A3P25940 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
COL5A3P25940 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A3P25940 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A3P25940 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL5A3P25940 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.24■□□□□ 0.67
COL5A3P25940 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
COL5A3P25940 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A3P25940 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A3P25940 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC19.24■□□□□ 0.67
COL5A3P25940 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A3P25940 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A3P25940 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC19.24■□□□□ 0.67
COL5A3P25940 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL5A3P25940 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
COL5A3P25940 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
COL5A3P25940 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC19.23■□□□□ 0.67
COL5A3P25940 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A3P25940 RN7SKP214-201ENST00000364208 315 ntBASIC19.23■□□□□ 0.67
COL5A3P25940 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC19.23■□□□□ 0.67
COL5A3P25940 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A3P25940 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC19.23■□□□□ 0.67
COL5A3P25940 AC104784.1-201ENST00000473096 294 ntBASIC19.23■□□□□ 0.67
COL5A3P25940 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC19.23■□□□□ 0.67
COL5A3P25940 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC19.23■□□□□ 0.67
COL5A3P25940 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC19.23■□□□□ 0.67
COL5A3P25940 STUB1-204ENST00000564370 875 ntTSL 2 BASIC19.23■□□□□ 0.67
COL5A3P25940 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC19.23■□□□□ 0.67
COL5A3P25940 AC020922.3-201ENST00000595064 547 ntBASIC19.23■□□□□ 0.67
COL5A3P25940 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
COL5A3P25940 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A3P25940 AC004923.1-202ENST00000642106 209 ntBASIC19.23■□□□□ 0.67
COL5A3P25940 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL5A3P25940 AC244394.1-201ENST00000435000 1665 ntBASIC19.23■□□□□ 0.67
COL5A3P25940 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL5A3P25940 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A3P25940 TNRC18P3-201ENST00000441896 2691 ntBASIC19.23■□□□□ 0.67
COL5A3P25940 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.23■□□□□ 0.67
COL5A3P25940 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL5A3P25940 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
COL5A3P25940 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL5A3P25940 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 RN7SKP230-201ENST00000365642 335 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
COL5A3P25940 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 AL138725.1-201ENST00000407347 1314 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 AL627389.1-201ENST00000413508 1182 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC19.22■□□□□ 0.67
COL5A3P25940 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC19.22■□□□□ 0.67
COL5A3P25940 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC19.22■□□□□ 0.67
COL5A3P25940 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 AL157791.1-201ENST00000553667 1699 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms