Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RTN3O95197 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.58■□□□□ 0.25
RTN3O95197 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RTN3O95197 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.25
RTN3O95197 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RTN3O95197 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
RTN3O95197 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RTN3O95197 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
RTN3O95197 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RTN3O95197 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RTN3O95197 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RTN3O95197 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RTN3O95197 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RTN3O95197 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
RTN3O95197 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.58■□□□□ 0.24
RTN3O95197 DGCR5-201ENST00000399539 862 ntBASIC16.58■□□□□ 0.24
RTN3O95197 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.58■□□□□ 0.24
RTN3O95197 AP006294.1-201ENST00000415407 339 ntBASIC16.58■□□□□ 0.24
RTN3O95197 NME2P1-201ENST00000426182 414 ntBASIC16.58■□□□□ 0.24
RTN3O95197 GAPDHP21-201ENST00000450301 1010 ntBASIC16.58■□□□□ 0.24
RTN3O95197 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.58■□□□□ 0.24
RTN3O95197 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.58■□□□□ 0.24
RTN3O95197 AC239800.4-201ENST00000603712 296 ntBASIC16.58■□□□□ 0.24
RTN3O95197 AL391069.4-201ENST00000609583 481 ntBASIC16.58■□□□□ 0.24
RTN3O95197 AL158212.4-201ENST00000624062 1286 ntBASIC16.58■□□□□ 0.24
RTN3O95197 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.58■□□□□ 0.24
RTN3O95197 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.58■□□□□ 0.24
RTN3O95197 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
RTN3O95197 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.58■□□□□ 0.24
RTN3O95197 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.58■□□□□ 0.24
RTN3O95197 LINC02447-202ENST00000501888 2146 ntBASIC16.58■□□□□ 0.24
RTN3O95197 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
RTN3O95197 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RTN3O95197 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
RTN3O95197 AC018892.3-201ENST00000623986 2499 ntBASIC16.57■□□□□ 0.24
RTN3O95197 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
RTN3O95197 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
RTN3O95197 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.57■□□□□ 0.24
RTN3O95197 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.57■□□□□ 0.24
RTN3O95197 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.57■□□□□ 0.24
RTN3O95197 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
RTN3O95197 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
RTN3O95197 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
RTN3O95197 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.57■□□□□ 0.24
RTN3O95197 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
RTN3O95197 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.57■□□□□ 0.24
RTN3O95197 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.57■□□□□ 0.24
RTN3O95197 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.57■□□□□ 0.24
RTN3O95197 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.57■□□□□ 0.24
RTN3O95197 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.57■□□□□ 0.24
RTN3O95197 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.57■□□□□ 0.24
RTN3O95197 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.57■□□□□ 0.24
RTN3O95197 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
RTN3O95197 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
RTN3O95197 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RTN3O95197 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RTN3O95197 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RTN3O95197 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.56■□□□□ 0.24
RTN3O95197 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
RTN3O95197 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RTN3O95197 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.56■□□□□ 0.24
RTN3O95197 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms