Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDP1Q9Y5B0 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CTDP1Q9Y5B0 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CTDP1Q9Y5B0 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CTDP1Q9Y5B0 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CTDP1Q9Y5B0 AL121723.1-201ENST00000445194 1519 ntBASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 AC011477.6-201ENST00000604980 1927 ntBASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 AL596087.1-201ENST00000400979 1969 ntBASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 KRT223P-202ENST00000449164 1292 ntBASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 CROCCP4-201ENST00000457096 498 ntBASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 AL662844.4-201ENST00000606367 2838 ntBASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CTDP1Q9Y5B0 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 LBX2-201ENST00000341396 886 ntTSL 3 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 AL355864.2-201ENST00000447420 863 ntBASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 MIR5189-201ENST00000577370 114 ntBASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 PCDHA12-202ENST00000613593 2588 ntBASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTDP1Q9Y5B0 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC18.12■□□□□ 0.49
CTDP1Q9Y5B0 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTDP1Q9Y5B0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTDP1Q9Y5B0 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms