Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC004890.2-204ENST00000481968 304 ntBASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 RNA5SP421-201ENST00000516864 134 ntBASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 ZNF890P-202ENST00000530367 1156 ntBASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 AC074044.1-201ENST00000609673 707 ntBASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 LINC00554-201ENST00000564841 3011 ntBASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.89□□□□□ -0.03
ATG4BQ9Y4P1 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 SLED1-202ENST00000512051 380 ntBASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 AC022532.1-201ENST00000624563 1728 ntBASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 AC126177.1-201ENST00000547829 2218 ntBASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
ATG4BQ9Y4P1 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 FAM8A3P-201ENST00000427218 844 ntBASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
ATG4BQ9Y4P1 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms