Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 RELA-227ENST00000615805 2236 ntTSL 5 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 AC098831.1-202ENST00000438821 336 ntBASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 POLD4-207ENST00000531239 584 ntTSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CHMP1AQ9HD42 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 GSN-206ENST00000394353 2311 ntTSL 2 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 LINC01101-201ENST00000622953 1884 ntBASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 AC004870.1-201ENST00000315132 882 ntBASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CHMP1AQ9HD42 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms