Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 AC026954.1-201ENST00000429771 1293 ntBASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 AC016694.1-201ENST00000434179 700 ntBASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.63■□□□□ 0.25
PAAF1Q9BRP4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 FAM86MP-201ENST00000340703 885 ntBASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 KRT90P-201ENST00000549264 1064 ntBASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PAAF1Q9BRP4 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 MIR4538-201ENST00000581377 78 ntBASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.61■□□□□ 0.25
PAAF1Q9BRP4 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms