Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKP4Q99569 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.31■□□□□ 0.04
PKP4Q99569 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKP4Q99569 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.31■□□□□ 0.04
PKP4Q99569 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.31■□□□□ 0.04
PKP4Q99569 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.31■□□□□ 0.04
PKP4Q99569 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.31■□□□□ 0.04
PKP4Q99569 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.31■□□□□ 0.04
PKP4Q99569 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.31■□□□□ 0.04
PKP4Q99569 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.31■□□□□ 0.04
PKP4Q99569 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PKP4Q99569 SLED1-202ENST00000512051 380 ntBASIC15.31■□□□□ 0.04
PKP4Q99569 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.31■□□□□ 0.04
PKP4Q99569 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.31■□□□□ 0.04
PKP4Q99569 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.31■□□□□ 0.04
PKP4Q99569 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.31■□□□□ 0.04
PKP4Q99569 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
PKP4Q99569 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.31■□□□□ 0.04
PKP4Q99569 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.31■□□□□ 0.04
PKP4Q99569 AC008738.7-201ENST00000609744 511 ntBASIC15.31■□□□□ 0.04
PKP4Q99569 AC004461.2-201ENST00000629517 803 ntBASIC15.31■□□□□ 0.04
PKP4Q99569 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.31■□□□□ 0.04
PKP4Q99569 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKP4Q99569 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PKP4Q99569 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.31■□□□□ 0.04
PKP4Q99569 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.31■□□□□ 0.04
PKP4Q99569 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PKP4Q99569 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.31■□□□□ 0.04
PKP4Q99569 AC022144.1-201ENST00000602255 1580 ntBASIC15.31■□□□□ 0.04
PKP4Q99569 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKP4Q99569 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKP4Q99569 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.31■□□□□ 0.04
PKP4Q99569 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.31■□□□□ 0.04
PKP4Q99569 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PKP4Q99569 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
PKP4Q99569 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.3■□□□□ 0.04
PKP4Q99569 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
PKP4Q99569 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PKP4Q99569 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.3■□□□□ 0.04
PKP4Q99569 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PKP4Q99569 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.3■□□□□ 0.04
PKP4Q99569 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.3■□□□□ 0.04
PKP4Q99569 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.3■□□□□ 0.04
PKP4Q99569 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.3■□□□□ 0.04
PKP4Q99569 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.3■□□□□ 0.04
PKP4Q99569 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.3■□□□□ 0.04
PKP4Q99569 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.3■□□□□ 0.04
PKP4Q99569 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.3■□□□□ 0.04
PKP4Q99569 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PKP4Q99569 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.3■□□□□ 0.04
PKP4Q99569 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PKP4Q99569 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.3■□□□□ 0.04
PKP4Q99569 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.3■□□□□ 0.04
PKP4Q99569 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.3■□□□□ 0.04
PKP4Q99569 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PKP4Q99569 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
PKP4Q99569 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.3■□□□□ 0.04
PKP4Q99569 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKP4Q99569 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PKP4Q99569 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.29■□□□□ 0.04
PKP4Q99569 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKP4Q99569 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PKP4Q99569 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms