Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.98■□□□□ 0.47
USP28Q96RU2 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP28Q96RU2 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
USP28Q96RU2 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
USP28Q96RU2 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP28Q96RU2 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.97■□□□□ 0.47
USP28Q96RU2 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP28Q96RU2 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP28Q96RU2 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
USP28Q96RU2 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP28Q96RU2 CICP11-201ENST00000434745 2827 ntBASIC17.97■□□□□ 0.47
USP28Q96RU2 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP28Q96RU2 AC084364.1-201ENST00000551967 1556 ntBASIC17.97■□□□□ 0.47
USP28Q96RU2 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.97■□□□□ 0.47
USP28Q96RU2 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.97■□□□□ 0.47
USP28Q96RU2 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USP28Q96RU2 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP28Q96RU2 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.97■□□□□ 0.47
USP28Q96RU2 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
USP28Q96RU2 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.97■□□□□ 0.47
USP28Q96RU2 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.97■□□□□ 0.47
USP28Q96RU2 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
USP28Q96RU2 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.97■□□□□ 0.47
USP28Q96RU2 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USP28Q96RU2 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC17.97■□□□□ 0.47
USP28Q96RU2 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
USP28Q96RU2 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
USP28Q96RU2 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.97■□□□□ 0.47
USP28Q96RU2 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.97■□□□□ 0.47
USP28Q96RU2 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USP28Q96RU2 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.97■□□□□ 0.47
USP28Q96RU2 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.97■□□□□ 0.47
USP28Q96RU2 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
USP28Q96RU2 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
USP28Q96RU2 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
USP28Q96RU2 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.96■□□□□ 0.47
USP28Q96RU2 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
USP28Q96RU2 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 AL136379.1-201ENST00000623471 2642 ntBASIC17.96■□□□□ 0.47
USP28Q96RU2 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.96■□□□□ 0.47
USP28Q96RU2 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
USP28Q96RU2 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.96■□□□□ 0.47
USP28Q96RU2 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
USP28Q96RU2 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.96■□□□□ 0.47
USP28Q96RU2 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 AC023141.5-201ENST00000458585 616 ntBASIC17.96■□□□□ 0.47
USP28Q96RU2 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.96■□□□□ 0.47
USP28Q96RU2 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.96■□□□□ 0.47
USP28Q96RU2 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
USP28Q96RU2 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
USP28Q96RU2 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.96■□□□□ 0.47
USP28Q96RU2 COCH-203ENST00000460581 2688 ntTSL 2 BASIC17.96■□□□□ 0.47
USP28Q96RU2 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.96■□□□□ 0.47
USP28Q96RU2 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.96■□□□□ 0.47
USP28Q96RU2 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP28Q96RU2 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.96■□□□□ 0.46
USP28Q96RU2 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
USP28Q96RU2 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
USP28Q96RU2 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.95■□□□□ 0.46
USP28Q96RU2 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.95■□□□□ 0.46
USP28Q96RU2 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
USP28Q96RU2 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.95■□□□□ 0.46
USP28Q96RU2 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
USP28Q96RU2 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
USP28Q96RU2 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.95■□□□□ 0.46
USP28Q96RU2 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 UPF3AP3-201ENST00000420996 769 ntBASIC17.95■□□□□ 0.46
USP28Q96RU2 BX842568.4-201ENST00000421222 227 ntBASIC17.95■□□□□ 0.46
USP28Q96RU2 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.95■□□□□ 0.46
USP28Q96RU2 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms