Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 SPDYE17-201ENST00000412399 783 ntBASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 ZNF890P-202ENST00000530367 1156 ntBASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 SDHAP3-202ENST00000515467 728 ntBASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 AP005018.1-201ENST00000525475 301 ntBASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 AC025048.6-201ENST00000634326 1161 ntBASIC15.27■□□□□ 0.04
CLIP3Q96DZ5 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 ME2P1-201ENST00000426028 1970 ntBASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLIP3Q96DZ5 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 AL136982.4-201ENST00000437689 1740 ntBASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 SPDYE19P-201ENST00000338590 713 ntBASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 AL353779.1-201ENST00000434793 351 ntBASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 GNAQP1-201ENST00000444815 1067 ntBASIC15.26■□□□□ 0.03
CLIP3Q96DZ5 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms