Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.25■□□□□ 0.03
LMX1AQ8TE12 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 MTHFR-217ENST00000641820 1569 ntBASIC15.24■□□□□ 0.03
LMX1AQ8TE12 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 FAM21FP-201ENST00000426241 1131 ntBASIC15.24■□□□□ 0.03
LMX1AQ8TE12 C2orf27AP3-201ENST00000434123 579 ntBASIC15.24■□□□□ 0.03
LMX1AQ8TE12 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 FO681548.1-201ENST00000455617 1132 ntBASIC15.24■□□□□ 0.03
LMX1AQ8TE12 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 AL583810.1-201ENST00000553344 1045 ntBASIC15.24■□□□□ 0.03
LMX1AQ8TE12 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 AC244669.2-201ENST00000612320 853 ntBASIC15.24■□□□□ 0.03
LMX1AQ8TE12 AL354718.3-201ENST00000616414 581 ntBASIC15.24■□□□□ 0.03
LMX1AQ8TE12 CR382287.1-201ENST00000623954 586 ntBASIC15.24■□□□□ 0.03
LMX1AQ8TE12 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 AP003680.1-201ENST00000598970 3660 ntBASIC15.24■□□□□ 0.03
LMX1AQ8TE12 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 AC124067.4-201ENST00000519691 2379 ntBASIC15.24■□□□□ 0.03
LMX1AQ8TE12 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LMX1AQ8TE12 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 AC069224.1-201ENST00000566372 1715 ntBASIC15.23■□□□□ 0.03
LMX1AQ8TE12 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 AP000812.2-201ENST00000538934 718 ntBASIC15.23■□□□□ 0.03
LMX1AQ8TE12 MIR4538-201ENST00000581377 78 ntBASIC15.23■□□□□ 0.03
LMX1AQ8TE12 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms