Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 AC068587.3-201ENST00000526613 355 ntBASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 SNX29P1-201ENST00000548357 1007 ntBASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 AL359881.2-201ENST00000602973 570 ntBASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 AC025181.2-201ENST00000606994 802 ntBASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 AC017083.2-201ENST00000608069 979 ntBASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CCDC60Q8IWA6 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 MIR1909-201ENST00000411312 80 ntBASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 AC022210.1-201ENST00000449856 793 ntBASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 AC093813.1-201ENST00000605066 256 ntBASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC60Q8IWA6 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms