Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
SOX4Q06945 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SOX4Q06945 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SOX4Q06945 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SOX4Q06945 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX4Q06945 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX4Q06945 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX4Q06945 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.67■□□□□ 0.26
SOX4Q06945 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SOX4Q06945 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.67■□□□□ 0.26
SOX4Q06945 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
SOX4Q06945 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
SOX4Q06945 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
SOX4Q06945 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.66■□□□□ 0.26
SOX4Q06945 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.66■□□□□ 0.26
SOX4Q06945 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.66■□□□□ 0.26
SOX4Q06945 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.66■□□□□ 0.26
SOX4Q06945 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.66■□□□□ 0.26
SOX4Q06945 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SOX4Q06945 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.66■□□□□ 0.26
SOX4Q06945 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.66■□□□□ 0.26
SOX4Q06945 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.66■□□□□ 0.26
SOX4Q06945 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 GNRHR2-203ENST00000581100 1187 ntBASIC16.66■□□□□ 0.26
SOX4Q06945 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
SOX4Q06945 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.66■□□□□ 0.26
SOX4Q06945 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.66■□□□□ 0.26
SOX4Q06945 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.66■□□□□ 0.26
SOX4Q06945 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.66■□□□□ 0.26
SOX4Q06945 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.66■□□□□ 0.26
SOX4Q06945 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.66■□□□□ 0.26
SOX4Q06945 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SOX4Q06945 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.66■□□□□ 0.26
SOX4Q06945 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.66■□□□□ 0.26
SOX4Q06945 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.65■□□□□ 0.26
SOX4Q06945 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.65■□□□□ 0.26
SOX4Q06945 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.65■□□□□ 0.26
SOX4Q06945 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.65■□□□□ 0.26
SOX4Q06945 AC105250.1-201ENST00000509378 2057 ntBASIC16.65■□□□□ 0.26
SOX4Q06945 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SOX4Q06945 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SOX4Q06945 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.65■□□□□ 0.26
SOX4Q06945 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.65■□□□□ 0.26
SOX4Q06945 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.65■□□□□ 0.26
SOX4Q06945 KRT43P-201ENST00000434019 910 ntBASIC16.65■□□□□ 0.26
SOX4Q06945 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
SOX4Q06945 CTBP2P5-201ENST00000454986 1264 ntBASIC16.65■□□□□ 0.26
SOX4Q06945 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.65■□□□□ 0.26
SOX4Q06945 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.65■□□□□ 0.26
SOX4Q06945 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.65■□□□□ 0.26
SOX4Q06945 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.65■□□□□ 0.26
SOX4Q06945 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 COX11-210ENST00000639671 696 ntBASIC16.65■□□□□ 0.26
SOX4Q06945 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.65■□□□□ 0.26
SOX4Q06945 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SOX4Q06945 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
SOX4Q06945 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.65■□□□□ 0.26
SOX4Q06945 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.65■□□□□ 0.26
SOX4Q06945 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
SOX4Q06945 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SOX4Q06945 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.64■□□□□ 0.26
SOX4Q06945 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SOX4Q06945 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms