Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.19■□□□□ 0.02
HMGCS1Q01581 GPS2P2-201ENST00000430745 888 ntBASIC15.19■□□□□ 0.02
HMGCS1Q01581 RBPMS2P1-201ENST00000437762 623 ntBASIC15.19■□□□□ 0.02
HMGCS1Q01581 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGCS1Q01581 AC211476.1-201ENST00000503899 468 ntBASIC15.19■□□□□ 0.02
HMGCS1Q01581 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGCS1Q01581 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGCS1Q01581 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
HMGCS1Q01581 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGCS1Q01581 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.19■□□□□ 0.02
HMGCS1Q01581 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGCS1Q01581 AC003101.2-201ENST00000612557 442 ntBASIC15.19■□□□□ 0.02
HMGCS1Q01581 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGCS1Q01581 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HMGCS1Q01581 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGCS1Q01581 MST1L-201ENST00000442552 2185 ntBASIC15.19■□□□□ 0.02
HMGCS1Q01581 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGCS1Q01581 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGCS1Q01581 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGCS1Q01581 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGCS1Q01581 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGCS1Q01581 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGCS1Q01581 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGCS1Q01581 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGCS1Q01581 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGCS1Q01581 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 AC139530.3-201ENST00000620344 690 ntBASIC15.18■□□□□ 0.02
HMGCS1Q01581 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGCS1Q01581 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGCS1Q01581 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 AL513477.1-201ENST00000602865 2407 ntBASIC15.17■□□□□ 0.02
HMGCS1Q01581 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 KRT8P44-201ENST00000441609 1350 ntBASIC15.17■□□□□ 0.02
HMGCS1Q01581 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 SPDYE14P-201ENST00000442619 822 ntBASIC15.17■□□□□ 0.02
HMGCS1Q01581 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms