Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.89□□□□□ -0.03
RAE1P78406 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
RAE1P78406 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.89□□□□□ -0.03
RAE1P78406 RPL5P21-201ENST00000404620 815 ntBASIC14.89□□□□□ -0.03
RAE1P78406 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.89□□□□□ -0.03
RAE1P78406 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
RAE1P78406 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.89□□□□□ -0.03
RAE1P78406 AC092580.3-201ENST00000430932 139 ntBASIC14.89□□□□□ -0.03
RAE1P78406 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.89□□□□□ -0.03
RAE1P78406 KLF2P3-201ENST00000451977 1087 ntBASIC14.89□□□□□ -0.03
RAE1P78406 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.89□□□□□ -0.03
RAE1P78406 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 AC125807.1-201ENST00000483097 614 ntBASIC14.89□□□□□ -0.03
RAE1P78406 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.89□□□□□ -0.03
RAE1P78406 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.89□□□□□ -0.03
RAE1P78406 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.89□□□□□ -0.03
RAE1P78406 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.89□□□□□ -0.03
RAE1P78406 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.89□□□□□ -0.03
RAE1P78406 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 AC004449.1-201ENST00000564240 433 ntBASIC14.89□□□□□ -0.03
RAE1P78406 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
RAE1P78406 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.89□□□□□ -0.03
RAE1P78406 AC073592.8-201ENST00000624126 511 ntBASIC14.89□□□□□ -0.03
RAE1P78406 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.89□□□□□ -0.03
RAE1P78406 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.89□□□□□ -0.03
RAE1P78406 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.89□□□□□ -0.03
RAE1P78406 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
RAE1P78406 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RAE1P78406 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 CICP24-201ENST00000605464 2705 ntBASIC14.88□□□□□ -0.03
RAE1P78406 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.88□□□□□ -0.03
RAE1P78406 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.88□□□□□ -0.03
RAE1P78406 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 AC025678.2-201ENST00000562061 970 ntBASIC14.88□□□□□ -0.03
RAE1P78406 AC015910.1-201ENST00000579400 975 ntBASIC14.88□□□□□ -0.03
RAE1P78406 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 AC093028.1-201ENST00000622998 982 ntBASIC14.88□□□□□ -0.03
RAE1P78406 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 AC079781.4-201ENST00000641908 219 ntBASIC14.88□□□□□ -0.03
RAE1P78406 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.88□□□□□ -0.03
RAE1P78406 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
RAE1P78406 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RAE1P78406 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RAE1P78406 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
RAE1P78406 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
RAE1P78406 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms