Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
YBX1P67809 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
YBX1P67809 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
YBX1P67809 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
YBX1P67809 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 MIR661-201ENST00000384842 89 ntBASIC15.33■□□□□ 0.04
YBX1P67809 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.33■□□□□ 0.04
YBX1P67809 AC074338.1-201ENST00000416825 156 ntBASIC15.33■□□□□ 0.04
YBX1P67809 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.33■□□□□ 0.04
YBX1P67809 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.33■□□□□ 0.04
YBX1P67809 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.33■□□□□ 0.04
YBX1P67809 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.33■□□□□ 0.04
YBX1P67809 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
YBX1P67809 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.33■□□□□ 0.04
YBX1P67809 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.33■□□□□ 0.04
YBX1P67809 AL450472.2-201ENST00000603663 1156 ntBASIC15.33■□□□□ 0.04
YBX1P67809 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 AC004790.1-201ENST00000612686 536 ntBASIC15.33■□□□□ 0.04
YBX1P67809 AC004840.1-201ENST00000636359 365 ntBASIC15.33■□□□□ 0.04
YBX1P67809 AL109936.8-201ENST00000641772 604 ntBASIC15.33■□□□□ 0.04
YBX1P67809 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
YBX1P67809 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
YBX1P67809 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
YBX1P67809 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
YBX1P67809 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.33■□□□□ 0.04
YBX1P67809 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
YBX1P67809 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.33■□□□□ 0.04
YBX1P67809 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.32■□□□□ 0.04
YBX1P67809 AL607033.1-201ENST00000623900 1599 ntBASIC15.32■□□□□ 0.04
YBX1P67809 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.32■□□□□ 0.04
YBX1P67809 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 BASP1P1-201ENST00000430708 665 ntBASIC15.32■□□□□ 0.04
YBX1P67809 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.32■□□□□ 0.04
YBX1P67809 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.32■□□□□ 0.04
YBX1P67809 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.32■□□□□ 0.04
YBX1P67809 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.32■□□□□ 0.04
YBX1P67809 SPDYE18-201ENST00000510091 1050 ntBASIC15.32■□□□□ 0.04
YBX1P67809 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.32■□□□□ 0.04
YBX1P67809 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.32■□□□□ 0.04
YBX1P67809 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.32■□□□□ 0.04
YBX1P67809 AC025048.3-201ENST00000590609 569 ntBASIC15.32■□□□□ 0.04
YBX1P67809 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.32■□□□□ 0.04
YBX1P67809 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.32■□□□□ 0.04
YBX1P67809 AC005702.4-201ENST00000618393 416 ntBASIC15.32■□□□□ 0.04
YBX1P67809 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.32■□□□□ 0.04
YBX1P67809 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.32■□□□□ 0.04
YBX1P67809 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.32■□□□□ 0.04
YBX1P67809 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
YBX1P67809 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
YBX1P67809 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
YBX1P67809 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.32■□□□□ 0.04
YBX1P67809 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.32■□□□□ 0.04
YBX1P67809 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.32■□□□□ 0.04
YBX1P67809 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.32■□□□□ 0.04
YBX1P67809 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
YBX1P67809 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.32■□□□□ 0.04
YBX1P67809 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
YBX1P67809 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
YBX1P67809 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.32■□□□□ 0.04
YBX1P67809 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
YBX1P67809 C18orf15-201ENST00000623680 2534 ntBASIC15.32■□□□□ 0.04
YBX1P67809 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.31■□□□□ 0.04
YBX1P67809 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.31■□□□□ 0.04
YBX1P67809 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
YBX1P67809 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.31■□□□□ 0.04
YBX1P67809 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.31■□□□□ 0.04
YBX1P67809 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
YBX1P67809 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
YBX1P67809 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
YBX1P67809 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
YBX1P67809 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.31■□□□□ 0.04
YBX1P67809 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
YBX1P67809 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms