Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
HOXA1P49639 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
HOXA1P49639 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 KRT18P35-201ENST00000510488 1269 ntBASIC13.16□□□□□ -0.3
HOXA1P49639 AC136632.2-201ENST00000512891 861 ntBASIC13.16□□□□□ -0.3
HOXA1P49639 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC13.16□□□□□ -0.3
HOXA1P49639 PNMT-203ENST00000581428 677 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 AC107918.4-202ENST00000641623 219 ntBASIC13.16□□□□□ -0.3
HOXA1P49639 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 AC012569.1-201ENST00000591191 1524 ntBASIC13.16□□□□□ -0.3
HOXA1P49639 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC13.16□□□□□ -0.3
HOXA1P49639 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXA1P49639 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXA1P49639 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXA1P49639 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXA1P49639 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXA1P49639 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXA1P49639 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXA1P49639 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC13.15□□□□□ -0.3
HOXA1P49639 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 U82695.1-201ENST00000635752 1889 ntBASIC13.15□□□□□ -0.3
HOXA1P49639 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXA1P49639 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HOXA1P49639 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
HOXA1P49639 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
HOXA1P49639 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 MIR1224-201ENST00000408193 85 ntBASIC13.15□□□□□ -0.3
HOXA1P49639 SAPCD2P3-201ENST00000455031 850 ntBASIC13.15□□□□□ -0.3
HOXA1P49639 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC13.15□□□□□ -0.3
HOXA1P49639 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXA1P49639 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC13.15□□□□□ -0.3
HOXA1P49639 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC13.15□□□□□ -0.3
HOXA1P49639 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
HOXA1P49639 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXA1P49639 AC021087.4-201ENST00000563761 564 ntBASIC13.15□□□□□ -0.3
HOXA1P49639 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC13.15□□□□□ -0.3
HOXA1P49639 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXA1P49639 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXA1P49639 REXO1L6P-202ENST00000619970 1078 ntBASIC13.15□□□□□ -0.3
HOXA1P49639 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXA1P49639 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXA1P49639 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXA1P49639 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC13.15□□□□□ -0.3
HOXA1P49639 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HOXA1P49639 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXA1P49639 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms