Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PDGFRAP16234 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.51■□□□□ 0.23
PDGFRAP16234 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.51■□□□□ 0.23
PDGFRAP16234 AC074338.1-201ENST00000416825 156 ntBASIC16.51■□□□□ 0.23
PDGFRAP16234 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.51■□□□□ 0.23
PDGFRAP16234 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.51■□□□□ 0.23
PDGFRAP16234 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.51■□□□□ 0.23
PDGFRAP16234 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.51■□□□□ 0.23
PDGFRAP16234 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.51■□□□□ 0.23
PDGFRAP16234 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
PDGFRAP16234 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PDGFRAP16234 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.51■□□□□ 0.23
PDGFRAP16234 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PDGFRAP16234 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDGFRAP16234 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
PDGFRAP16234 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PDGFRAP16234 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.5■□□□□ 0.23
PDGFRAP16234 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
PDGFRAP16234 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.5■□□□□ 0.23
PDGFRAP16234 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PDGFRAP16234 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.5■□□□□ 0.23
PDGFRAP16234 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
PDGFRAP16234 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.5■□□□□ 0.23
PDGFRAP16234 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
PDGFRAP16234 AC067930.6-201ENST00000623257 4947 ntBASIC16.5■□□□□ 0.23
PDGFRAP16234 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PDGFRAP16234 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PDGFRAP16234 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.5■□□□□ 0.23
PDGFRAP16234 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.5■□□□□ 0.23
PDGFRAP16234 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.5■□□□□ 0.23
PDGFRAP16234 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.5■□□□□ 0.23
PDGFRAP16234 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.5■□□□□ 0.23
PDGFRAP16234 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.5■□□□□ 0.23
PDGFRAP16234 SDHAP3-202ENST00000515467 728 ntBASIC16.5■□□□□ 0.23
PDGFRAP16234 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.5■□□□□ 0.23
PDGFRAP16234 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.5■□□□□ 0.23
PDGFRAP16234 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.5■□□□□ 0.23
PDGFRAP16234 AL109936.8-201ENST00000641772 604 ntBASIC16.5■□□□□ 0.23
PDGFRAP16234 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.5■□□□□ 0.23
PDGFRAP16234 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
PDGFRAP16234 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 AC013268.4-201ENST00000637413 2228 ntBASIC16.5■□□□□ 0.23
PDGFRAP16234 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
PDGFRAP16234 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 FLJ16779-201ENST00000612722 7638 ntBASIC16.5■□□□□ 0.23
PDGFRAP16234 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.5■□□□□ 0.23
PDGFRAP16234 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDGFRAP16234 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFRAP16234 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFRAP16234 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.49■□□□□ 0.23
PDGFRAP16234 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.49■□□□□ 0.23
PDGFRAP16234 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.49■□□□□ 0.23
PDGFRAP16234 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFRAP16234 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFRAP16234 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFRAP16234 AC126177.1-201ENST00000547829 2218 ntBASIC16.49■□□□□ 0.23
PDGFRAP16234 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFRAP16234 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.49■□□□□ 0.23
PDGFRAP16234 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFRAP16234 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms