Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 AC233702.3-201ENST00000578656 1387 ntBASIC12.26□□□□□ -0.45
CXCL1P09341 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
CXCL1P09341 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC12.26□□□□□ -0.45
CXCL1P09341 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
CXCL1P09341 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.26□□□□□ -0.45
CXCL1P09341 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
CXCL1P09341 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC12.25□□□□□ -0.45
CXCL1P09341 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
CXCL1P09341 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
CXCL1P09341 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC12.25□□□□□ -0.45
CXCL1P09341 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.25□□□□□ -0.45
CXCL1P09341 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC12.25□□□□□ -0.45
CXCL1P09341 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC12.25□□□□□ -0.45
CXCL1P09341 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC12.25□□□□□ -0.45
CXCL1P09341 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC12.25□□□□□ -0.45
CXCL1P09341 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC12.25□□□□□ -0.45
CXCL1P09341 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
CXCL1P09341 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
CXCL1P09341 PRYP5-201ENST00000451909 266 ntBASIC12.25□□□□□ -0.45
CXCL1P09341 MINOS1P3-201ENST00000457048 203 ntBASIC12.25□□□□□ -0.45
CXCL1P09341 AC096582.2-201ENST00000510860 516 ntBASIC12.25□□□□□ -0.45
CXCL1P09341 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
CXCL1P09341 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC12.25□□□□□ -0.45
CXCL1P09341 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC12.25□□□□□ -0.45
CXCL1P09341 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 BNIP3P18-201ENST00000593976 575 ntBASIC12.25□□□□□ -0.45
CXCL1P09341 COPE-211ENST00000600932 1144 ntTSL 5 BASIC12.25□□□□□ -0.45
CXCL1P09341 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC12.25□□□□□ -0.45
CXCL1P09341 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC12.25□□□□□ -0.45
CXCL1P09341 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC12.25□□□□□ -0.45
CXCL1P09341 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
CXCL1P09341 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
CXCL1P09341 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CXCL1P09341 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
CXCL1P09341 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 AC073869.1-201ENST00000415574 2762 ntBASIC12.24□□□□□ -0.45
CXCL1P09341 AL118506.1-201ENST00000601296 3082 ntBASIC12.24□□□□□ -0.45
CXCL1P09341 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
CXCL1P09341 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC12.24□□□□□ -0.45
CXCL1P09341 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
CXCL1P09341 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.24□□□□□ -0.45
CXCL1P09341 NCF1C-201ENST00000438382 1427 ntBASIC12.24□□□□□ -0.45
CXCL1P09341 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms