Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AC245100.5-201ENST00000452108 331 ntBASIC11.9□□□□□ -0.5
HLA-DQA1P01909 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 EHF-205ENST00000527935 557 ntTSL 2 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AC009533.2-201ENST00000543664 586 ntBASIC11.9□□□□□ -0.5
HLA-DQA1P01909 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AC011840.4-201ENST00000578471 627 ntBASIC11.9□□□□□ -0.5
HLA-DQA1P01909 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AC090616.6-201ENST00000582640 721 ntBASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AC005336.2-201ENST00000593183 939 ntBASIC11.9□□□□□ -0.5
HLA-DQA1P01909 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AP001350.2-201ENST00000625104 1094 ntBASIC11.9□□□□□ -0.5
HLA-DQA1P01909 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DQA1P01909 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DQA1P01909 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DQA1P01909 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DQA1P01909 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC11.9□□□□□ -0.51
HLA-DQA1P01909 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DQA1P01909 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DQA1P01909 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DQA1P01909 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DQA1P01909 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DQA1P01909 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC11.9□□□□□ -0.51
HLA-DQA1P01909 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC11.9□□□□□ -0.51
HLA-DQA1P01909 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 AC148477.5-201ENST00000625164 1645 ntBASIC11.89□□□□□ -0.51
HLA-DQA1P01909 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 NIN-202ENST00000324330 4364 ntTSL 5 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 FAM86EP-206ENST00000510506 987 ntBASIC11.89□□□□□ -0.51
HLA-DQA1P01909 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
HLA-DQA1P01909 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms