Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 GUK1-204ENST00000366721 689 ntTSL 3 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 MMP17-203ENST00000535004 719 ntTSL 3 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 MPI-205ENST00000562606 1052 ntTSL 3 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 AL805961.1-202ENST00000641562 540 ntBASIC11.57□□□□□ -0.56
SMKR1H3BMG3 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 AC127383.1-201ENST00000444697 1800 ntBASIC11.57□□□□□ -0.56
SMKR1H3BMG3 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 USP35-204ENST00000530267 2419 ntTSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 AC093724.1-201ENST00000448659 1027 ntBASIC11.56□□□□□ -0.56
SMKR1H3BMG3 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 DUX4L26-201ENST00000489078 1255 ntBASIC11.56□□□□□ -0.56
SMKR1H3BMG3 MTRF1LP2-201ENST00000506027 1122 ntBASIC11.56□□□□□ -0.56
SMKR1H3BMG3 RNF151-202ENST00000569210 853 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 CYB561-216ENST00000582297 897 ntTSL 3 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 AC138894.3-201ENST00000603787 634 ntBASIC11.56□□□□□ -0.56
SMKR1H3BMG3 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 C1R-201ENST00000535233 2211 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC11.56□□□□□ -0.56
SMKR1H3BMG3 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms