Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 RNA5SP423-201ENST00000517127 109 ntBASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 AC008687.7-202ENST00000637404 953 ntBASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.41■□□□□ 0.22
LIMD1Q9UGP4 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 RN7SL190P-201ENST00000582519 257 ntBASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 AC005252.2-201ENST00000624630 1141 ntBASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMD1Q9UGP4 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 C2orf27AP3-201ENST00000434123 579 ntBASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 AC104306.2-201ENST00000451877 341 ntBASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 IGHJ2P-201ENST00000454480 60 ntBASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 KRT90P-201ENST00000549264 1064 ntBASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 AC243562.2-201ENST00000561247 970 ntBASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 AL021578.1-201ENST00000613646 709 ntBASIC16.39■□□□□ 0.21
LIMD1Q9UGP4 AL354718.3-201ENST00000616414 581 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms