Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 AC093909.1-201ENST00000504731 1122 ntBASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 AC148477.8-201ENST00000624298 468 ntBASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 AL359258.3-201ENST00000622910 2331 ntBASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.23
CHMP1AQ9HD42 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.23
CHMP1AQ9HD42 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
CHMP1AQ9HD42 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 VN2R19P-201ENST00000442399 1052 ntBASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 AC093724.1-201ENST00000448659 1027 ntBASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 AL365330.1-201ENST00000607459 531 ntBASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 AL773604.1-201ENST00000617417 272 ntBASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CHMP1AQ9HD42 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms