Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 AC007950.2-201ENST00000615045 2347 ntBASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 AC104794.3-201ENST00000566840 1248 ntBASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 AC092337.1-201ENST00000568699 1129 ntBASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 AC138761.1-201ENST00000584393 385 ntBASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM39Q9HCM9 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 SPDYE18-201ENST00000510091 1050 ntBASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 DOC2GP-202ENST00000514950 1163 ntBASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 AC004233.3-201ENST00000607794 1269 ntBASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 AL607033.1-201ENST00000623900 1599 ntBASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM39Q9HCM9 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 AC074338.1-201ENST00000416825 156 ntBASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 RPL13P2-201ENST00000440687 659 ntBASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms