Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 Z92544.3-201ENST00000624747 417 ntBASIC16.28■□□□□ 0.2
PCDH9Q9HC56 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 AC068418.2-201ENST00000577309 3703 ntBASIC16.28■□□□□ 0.2
PCDH9Q9HC56 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH9Q9HC56 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 AC093028.1-201ENST00000622998 982 ntBASIC16.27■□□□□ 0.2
PCDH9Q9HC56 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PCDH9Q9HC56 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.27■□□□□ 0.19
PCDH9Q9HC56 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PCDH9Q9HC56 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.19
PCDH9Q9HC56 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PCDH9Q9HC56 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
PCDH9Q9HC56 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
PCDH9Q9HC56 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PCDH9Q9HC56 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PCDH9Q9HC56 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
PCDH9Q9HC56 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PCDH9Q9HC56 LINC02228-204ENST00000642115 2962 ntBASIC16.26■□□□□ 0.19
PCDH9Q9HC56 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 CNN2P2-201ENST00000443536 909 ntBASIC16.26■□□□□ 0.19
PCDH9Q9HC56 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 CNN2P3-201ENST00000450201 906 ntBASIC16.26■□□□□ 0.19
PCDH9Q9HC56 AC092183.1-201ENST00000469884 875 ntBASIC16.26■□□□□ 0.19
PCDH9Q9HC56 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 BANF1P1-201ENST00000553684 263 ntBASIC16.26■□□□□ 0.19
PCDH9Q9HC56 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 AC097359.3-201ENST00000603982 1210 ntBASIC16.26■□□□□ 0.19
PCDH9Q9HC56 AL136317.3-201ENST00000618497 906 ntBASIC16.26■□□□□ 0.19
PCDH9Q9HC56 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.26■□□□□ 0.19
PCDH9Q9HC56 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms