Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
PKP4Q99569 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PKP4Q99569 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.33■□□□□ 0.04
PKP4Q99569 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.33■□□□□ 0.04
PKP4Q99569 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.33■□□□□ 0.04
PKP4Q99569 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.33■□□□□ 0.04
PKP4Q99569 BASP1P1-201ENST00000430708 665 ntBASIC15.33■□□□□ 0.04
PKP4Q99569 KRT18P64-201ENST00000434946 1219 ntBASIC15.33■□□□□ 0.04
PKP4Q99569 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.33■□□□□ 0.04
PKP4Q99569 AL512638.1-201ENST00000457493 794 ntBASIC15.33■□□□□ 0.04
PKP4Q99569 ZNF890P-202ENST00000530367 1156 ntBASIC15.33■□□□□ 0.04
PKP4Q99569 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.33■□□□□ 0.04
PKP4Q99569 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PKP4Q99569 AC074044.1-201ENST00000609673 707 ntBASIC15.33■□□□□ 0.04
PKP4Q99569 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.33■□□□□ 0.04
PKP4Q99569 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.33■□□□□ 0.04
PKP4Q99569 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.33■□□□□ 0.04
PKP4Q99569 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
PKP4Q99569 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.33■□□□□ 0.04
PKP4Q99569 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.33■□□□□ 0.04
PKP4Q99569 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.33■□□□□ 0.04
PKP4Q99569 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKP4Q99569 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.33■□□□□ 0.04
PKP4Q99569 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 SSR4P1-203ENST00000599569 2260 ntBASIC15.32■□□□□ 0.04
PKP4Q99569 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PKP4Q99569 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.32■□□□□ 0.04
PKP4Q99569 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.32■□□□□ 0.04
PKP4Q99569 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.32■□□□□ 0.04
PKP4Q99569 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.32■□□□□ 0.04
PKP4Q99569 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 RPL13P2-201ENST00000440687 659 ntBASIC15.32■□□□□ 0.04
PKP4Q99569 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.32■□□□□ 0.04
PKP4Q99569 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.32■□□□□ 0.04
PKP4Q99569 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.32■□□□□ 0.04
PKP4Q99569 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.32■□□□□ 0.04
PKP4Q99569 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.32■□□□□ 0.04
PKP4Q99569 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.32■□□□□ 0.04
PKP4Q99569 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
PKP4Q99569 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKP4Q99569 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PKP4Q99569 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKP4Q99569 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PKP4Q99569 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKP4Q99569 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
PKP4Q99569 AC087481.3-201ENST00000602886 1894 ntBASIC15.31■□□□□ 0.04
PKP4Q99569 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PKP4Q99569 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PKP4Q99569 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.31■□□□□ 0.04
PKP4Q99569 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.31■□□□□ 0.04
PKP4Q99569 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms