Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.17■□□□□ 0.02
VMP1Q96GC9 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 AC051619.7-201ENST00000568314 623 ntBASIC15.17■□□□□ 0.02
VMP1Q96GC9 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 AC003101.2-201ENST00000612557 442 ntBASIC15.17■□□□□ 0.02
VMP1Q96GC9 AC093512.1-201ENST00000617969 520 ntBASIC15.17■□□□□ 0.02
VMP1Q96GC9 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
VMP1Q96GC9 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VMP1Q96GC9 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 AC107890.1-201ENST00000422478 521 ntBASIC15.16■□□□□ 0.02
VMP1Q96GC9 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 MIR4453-201ENST00000584019 89 ntBASIC15.16■□□□□ 0.02
VMP1Q96GC9 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 AL365330.1-201ENST00000607459 531 ntBASIC15.16■□□□□ 0.02
VMP1Q96GC9 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 AC007967.4-201ENST00000614700 386 ntBASIC15.16■□□□□ 0.02
VMP1Q96GC9 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.16■□□□□ 0.02
VMP1Q96GC9 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VMP1Q96GC9 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
VMP1Q96GC9 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms