Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 AC005225.4-201ENST00000557330 545 ntBASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 AC044860.1-202ENST00000559481 777 ntBASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 AC012645.4-201ENST00000610691 1061 ntBASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 AL662799.1-202ENST00000614205 422 ntBASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 AC079781.5-202ENST00000641784 3743 ntBASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 AC063926.2-201ENST00000623766 1308 ntBASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 AC104794.3-201ENST00000566840 1248 ntBASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 AL132655.2-201ENST00000596276 594 ntBASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLIP3Q96DZ5 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 AL137784.3-201ENST00000623858 2288 ntBASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
CLIP3Q96DZ5 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms