Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE4Q8N205 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 FAM86HP-204ENST00000513466 959 ntBASIC19.39■□□□□ 0.69
SYNE4Q8N205 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE4Q8N205 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SYNE4Q8N205 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.39■□□□□ 0.69
SYNE4Q8N205 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 PGGT1BP2-201ENST00000398621 1028 ntBASIC19.38■□□□□ 0.69
SYNE4Q8N205 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 C2orf27AP3-201ENST00000434123 579 ntBASIC19.38■□□□□ 0.69
SYNE4Q8N205 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 AL354718.3-201ENST00000616414 581 ntBASIC19.38■□□□□ 0.69
SYNE4Q8N205 CR382287.1-201ENST00000623954 586 ntBASIC19.38■□□□□ 0.69
SYNE4Q8N205 AC009090.5-201ENST00000624886 2285 ntBASIC19.38■□□□□ 0.69
SYNE4Q8N205 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SYNE4Q8N205 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
SYNE4Q8N205 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE4Q8N205 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE4Q8N205 AC092127.1-201ENST00000567093 3455 ntBASIC19.37■□□□□ 0.69
SYNE4Q8N205 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE4Q8N205 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE4Q8N205 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 RNA5SP423-201ENST00000517127 109 ntBASIC19.37■□□□□ 0.69
SYNE4Q8N205 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE4Q8N205 AL022328.3-201ENST00000607943 679 ntBASIC19.37■□□□□ 0.69
SYNE4Q8N205 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE4Q8N205 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE4Q8N205 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE4Q8N205 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SYNE4Q8N205 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SYNE4Q8N205 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 PRORSD1P-202ENST00000563365 2154 ntBASIC19.36■□□□□ 0.69
SYNE4Q8N205 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 KRT8P35-201ENST00000483942 1338 ntBASIC19.36■□□□□ 0.69
SYNE4Q8N205 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SYNE4Q8N205 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SYNE4Q8N205 SLC25A24P2-201ENST00000415059 510 ntBASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms