Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 AL590627.1-203ENST00000421194 1026 ntBASIC12.14□□□□□ -0.47
HIST1H1AQ02539 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 PRYP6-201ENST00000514804 343 ntBASIC12.14□□□□□ -0.47
HIST1H1AQ02539 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 POLL-217ENST00000628479 1953 ntTSL 5 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H1AQ02539 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 IL9RP2-201ENST00000423948 1312 ntBASIC12.13□□□□□ -0.47
HIST1H1AQ02539 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 AC002056.1-201ENST00000395613 760 ntBASIC12.13□□□□□ -0.47
HIST1H1AQ02539 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 AC074386.1-202ENST00000463561 864 ntBASIC12.13□□□□□ -0.47
HIST1H1AQ02539 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 AC112191.1-201ENST00000523689 701 ntBASIC12.13□□□□□ -0.47
HIST1H1AQ02539 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 CAND2-206ENST00000626378 333 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 PPT1-215ENST00000641471 2368 ntBASIC12.13□□□□□ -0.47
HIST1H1AQ02539 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H1AQ02539 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms