Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
IRX4P78413 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
IRX4P78413 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.48■□□□□ 0.23
IRX4P78413 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
IRX4P78413 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.48■□□□□ 0.23
IRX4P78413 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.48■□□□□ 0.23
IRX4P78413 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.48■□□□□ 0.23
IRX4P78413 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.48■□□□□ 0.23
IRX4P78413 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
IRX4P78413 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
IRX4P78413 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.47■□□□□ 0.23
IRX4P78413 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.47■□□□□ 0.23
IRX4P78413 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
IRX4P78413 AC142381.1-201ENST00000426099 345 ntBASIC16.47■□□□□ 0.23
IRX4P78413 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.47■□□□□ 0.23
IRX4P78413 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.47■□□□□ 0.23
IRX4P78413 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.47■□□□□ 0.23
IRX4P78413 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.47■□□□□ 0.23
IRX4P78413 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.47■□□□□ 0.23
IRX4P78413 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.47■□□□□ 0.23
IRX4P78413 AC007967.4-201ENST00000614700 386 ntBASIC16.47■□□□□ 0.23
IRX4P78413 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.47■□□□□ 0.23
IRX4P78413 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.47■□□□□ 0.23
IRX4P78413 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.47■□□□□ 0.23
IRX4P78413 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.47■□□□□ 0.23
IRX4P78413 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
IRX4P78413 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
IRX4P78413 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.47■□□□□ 0.23
IRX4P78413 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.47■□□□□ 0.23
IRX4P78413 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
IRX4P78413 AC007541.1-201ENST00000570282 1469 ntBASIC16.47■□□□□ 0.23
IRX4P78413 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.47■□□□□ 0.23
IRX4P78413 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
IRX4P78413 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
IRX4P78413 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
IRX4P78413 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
IRX4P78413 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
IRX4P78413 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
IRX4P78413 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
IRX4P78413 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.46■□□□□ 0.23
IRX4P78413 GPAA1P2-202ENST00000606848 1787 ntBASIC16.46■□□□□ 0.23
IRX4P78413 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.46■□□□□ 0.23
IRX4P78413 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 AC073347.1-201ENST00000421633 2643 ntBASIC16.46■□□□□ 0.23
IRX4P78413 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.46■□□□□ 0.23
IRX4P78413 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
IRX4P78413 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
IRX4P78413 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.46■□□□□ 0.23
IRX4P78413 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.46■□□□□ 0.23
IRX4P78413 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
IRX4P78413 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.46■□□□□ 0.23
IRX4P78413 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.46■□□□□ 0.23
IRX4P78413 HLA-V-204ENST00000476601 1289 ntBASIC16.46■□□□□ 0.23
IRX4P78413 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.46■□□□□ 0.23
IRX4P78413 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.46■□□□□ 0.23
IRX4P78413 MIR6799-201ENST00000620297 69 ntBASIC16.46■□□□□ 0.23
IRX4P78413 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.46■□□□□ 0.23
IRX4P78413 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.46■□□□□ 0.23
IRX4P78413 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.46■□□□□ 0.23
IRX4P78413 AC138969.3-201ENST00000546612 1459 ntBASIC16.46■□□□□ 0.23
IRX4P78413 AC138932.2-201ENST00000548268 1459 ntBASIC16.46■□□□□ 0.23
IRX4P78413 AC126755.4-201ENST00000549796 1459 ntBASIC16.46■□□□□ 0.23
IRX4P78413 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.46■□□□□ 0.23
IRX4P78413 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
IRX4P78413 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
IRX4P78413 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
IRX4P78413 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
IRX4P78413 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
IRX4P78413 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
IRX4P78413 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
IRX4P78413 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
IRX4P78413 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
IRX4P78413 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
IRX4P78413 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms