Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HMGCS2P54868 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGCS2P54868 PCDHA12-202ENST00000613593 2588 ntBASIC17.99■□□□□ 0.47
HMGCS2P54868 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGCS2P54868 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGCS2P54868 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
HMGCS2P54868 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGCS2P54868 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.99■□□□□ 0.47
HMGCS2P54868 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HMGCS2P54868 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGCS2P54868 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
HMGCS2P54868 MTX1P1-201ENST00000440904 838 ntBASIC17.99■□□□□ 0.47
HMGCS2P54868 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.99■□□□□ 0.47
HMGCS2P54868 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGCS2P54868 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGCS2P54868 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.99■□□□□ 0.47
HMGCS2P54868 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGCS2P54868 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
HMGCS2P54868 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGCS2P54868 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGCS2P54868 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGCS2P54868 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.99■□□□□ 0.47
HMGCS2P54868 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGCS2P54868 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.99■□□□□ 0.47
HMGCS2P54868 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGCS2P54868 AC148477.4-201ENST00000613430 1793 ntBASIC17.99■□□□□ 0.47
HMGCS2P54868 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGCS2P54868 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
HMGCS2P54868 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
HMGCS2P54868 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HMGCS2P54868 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
HMGCS2P54868 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.98■□□□□ 0.47
HMGCS2P54868 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGCS2P54868 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
HMGCS2P54868 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGCS2P54868 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 RPSAP36-202ENST00000494591 1261 ntBASIC17.98■□□□□ 0.47
HMGCS2P54868 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGCS2P54868 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGCS2P54868 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGCS2P54868 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.98■□□□□ 0.47
HMGCS2P54868 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 NKILA-202ENST00000614771 2598 ntBASIC17.98■□□□□ 0.47
HMGCS2P54868 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.98■□□□□ 0.47
HMGCS2P54868 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HMGCS2P54868 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.98■□□□□ 0.47
HMGCS2P54868 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.98■□□□□ 0.47
HMGCS2P54868 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 PCDHA14-201ENST00000506751 2298 ntBASIC17.97■□□□□ 0.47
HMGCS2P54868 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 CD8B2-202ENST00000417670 633 ntBASIC17.97■□□□□ 0.47
HMGCS2P54868 AC114812.1-204ENST00000449669 728 ntBASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms