Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL12P48061 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CXCL12P48061 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL12P48061 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL12P48061 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.5■□□□□ 0.07
CXCL12P48061 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL12P48061 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CXCL12P48061 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
CXCL12P48061 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 ALOX12P2-203ENST00000570921 1945 ntBASIC15.49■□□□□ 0.07
CXCL12P48061 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CXCL12P48061 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.49■□□□□ 0.07
CXCL12P48061 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
CXCL12P48061 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
CXCL12P48061 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC15.49■□□□□ 0.07
CXCL12P48061 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.49■□□□□ 0.07
CXCL12P48061 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.49■□□□□ 0.07
CXCL12P48061 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC15.49■□□□□ 0.07
CXCL12P48061 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
CXCL12P48061 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 PPY2P-201ENST00000582808 702 ntBASIC15.49■□□□□ 0.07
CXCL12P48061 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 PRSS30P-206ENST00000641773 873 ntBASIC15.49■□□□□ 0.07
CXCL12P48061 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CXCL12P48061 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.49■□□□□ 0.07
CXCL12P48061 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL12P48061 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.49■□□□□ 0.07
CXCL12P48061 AC011477.6-201ENST00000604980 1927 ntBASIC15.49■□□□□ 0.07
CXCL12P48061 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
CXCL12P48061 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 TUBBP5-203ENST00000508529 1334 ntBASIC15.48■□□□□ 0.07
CXCL12P48061 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CXCL12P48061 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
CXCL12P48061 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
CXCL12P48061 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
CXCL12P48061 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
CXCL12P48061 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 SDCCAG3P2-201ENST00000326105 1023 ntBASIC15.48■□□□□ 0.07
CXCL12P48061 AC091046.1-201ENST00000331871 207 ntBASIC15.48■□□□□ 0.07
CXCL12P48061 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.48■□□□□ 0.07
CXCL12P48061 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.48■□□□□ 0.07
CXCL12P48061 FTLP1-201ENST00000449155 526 ntBASIC15.48■□□□□ 0.07
CXCL12P48061 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.48■□□□□ 0.07
CXCL12P48061 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC15.48■□□□□ 0.07
CXCL12P48061 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.48■□□□□ 0.07
CXCL12P48061 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.48■□□□□ 0.07
CXCL12P48061 MIR7845-201ENST00000618396 99 ntBASIC15.48■□□□□ 0.07
CXCL12P48061 AC091544.8-201ENST00000619490 361 ntBASIC15.48■□□□□ 0.07
CXCL12P48061 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.48■□□□□ 0.07
CXCL12P48061 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.48■□□□□ 0.07
CXCL12P48061 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL12P48061 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CXCL12P48061 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CXCL12P48061 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.47■□□□□ 0.07
CXCL12P48061 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC15.47■□□□□ 0.07
CXCL12P48061 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CXCL12P48061 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.47■□□□□ 0.07
CXCL12P48061 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CXCL12P48061 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CXCL12P48061 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.47■□□□□ 0.07
CXCL12P48061 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.47■□□□□ 0.07
CXCL12P48061 MIR648-201ENST00000385046 94 ntBASIC15.47■□□□□ 0.07
CXCL12P48061 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CXCL12P48061 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.47■□□□□ 0.07
CXCL12P48061 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.47■□□□□ 0.07
CXCL12P48061 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CXCL12P48061 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC15.47■□□□□ 0.07
CXCL12P48061 RN7SL11P-201ENST00000471305 293 ntBASIC15.47■□□□□ 0.07
CXCL12P48061 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CXCL12P48061 SDHD-202ENST00000525291 790 ntTSL 3 BASIC15.47■□□□□ 0.07
CXCL12P48061 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms