Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CDX1P47902 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
CDX1P47902 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 LBH-203ENST00000404397 543 ntTSL 4 BASIC12.96□□□□□ -0.33
CDX1P47902 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC12.96□□□□□ -0.33
CDX1P47902 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC12.96□□□□□ -0.33
CDX1P47902 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC12.96□□□□□ -0.33
CDX1P47902 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC12.96□□□□□ -0.33
CDX1P47902 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC12.96□□□□□ -0.33
CDX1P47902 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CDX1P47902 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC12.96□□□□□ -0.34
CDX1P47902 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CDX1P47902 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CDX1P47902 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CDX1P47902 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CDX1P47902 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC12.96□□□□□ -0.34
CDX1P47902 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
CDX1P47902 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CDX1P47902 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CDX1P47902 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.34
CDX1P47902 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
CDX1P47902 WASH6P-202ENST00000359512 1437 ntBASIC12.96□□□□□ -0.34
CDX1P47902 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
CDX1P47902 PTENP1-202ENST00000532280 3996 ntBASIC12.96□□□□□ -0.34
CDX1P47902 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
CDX1P47902 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
CDX1P47902 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.34
CDX1P47902 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 ACE-204ENST00000428043 5120 ntTSL 2 BASIC12.95□□□□□ -0.34
CDX1P47902 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
CDX1P47902 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC12.95□□□□□ -0.34
CDX1P47902 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC12.95□□□□□ -0.34
CDX1P47902 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC12.95□□□□□ -0.34
CDX1P47902 AL596087.1-201ENST00000400979 1969 ntBASIC12.95□□□□□ -0.34
CDX1P47902 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CDX1P47902 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC12.95□□□□□ -0.34
CDX1P47902 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12.95□□□□□ -0.34
CDX1P47902 PMS2P2-201ENST00000425039 1128 ntBASIC12.95□□□□□ -0.34
CDX1P47902 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 TIMM8BP1-201ENST00000452384 211 ntBASIC12.95□□□□□ -0.34
CDX1P47902 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
CDX1P47902 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC12.95□□□□□ -0.34
CDX1P47902 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
CDX1P47902 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC12.95□□□□□ -0.34
CDX1P47902 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC12.95□□□□□ -0.34
CDX1P47902 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CDX1P47902 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC12.95□□□□□ -0.34
CDX1P47902 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
CDX1P47902 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CDX1P47902 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC12.95□□□□□ -0.34
CDX1P47902 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC12.95□□□□□ -0.34
CDX1P47902 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
CDX1P47902 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
CDX1P47902 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CDX1P47902 AC006277.1-201ENST00000624348 1610 ntBASIC12.95□□□□□ -0.34
CDX1P47902 LINC00895-201ENST00000629028 1637 ntBASIC12.95□□□□□ -0.34
CDX1P47902 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC12.94□□□□□ -0.34
CDX1P47902 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC12.94□□□□□ -0.34
CDX1P47902 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CDX1P47902 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC12.94□□□□□ -0.34
CDX1P47902 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms