Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.12■□□□□ 0.49
SCN4AP35499 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC18.12■□□□□ 0.49
SCN4AP35499 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SCN4AP35499 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SCN4AP35499 AC139713.2-201ENST00000641328 2723 ntBASIC18.12■□□□□ 0.49
SCN4AP35499 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SCN4AP35499 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SCN4AP35499 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC18.12■□□□□ 0.49
SCN4AP35499 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.12■□□□□ 0.49
SCN4AP35499 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SCN4AP35499 AC100827.2-201ENST00000563214 1194 ntBASIC18.12■□□□□ 0.49
SCN4AP35499 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SCN4AP35499 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC18.11■□□□□ 0.49
SCN4AP35499 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SCN4AP35499 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
SCN4AP35499 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SCN4AP35499 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC18.11■□□□□ 0.49
SCN4AP35499 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SCN4AP35499 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SCN4AP35499 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SCN4AP35499 CASP16P-204ENST00000635032 809 ntBASIC18.11■□□□□ 0.49
SCN4AP35499 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SCN4AP35499 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.11■□□□□ 0.49
SCN4AP35499 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SCN4AP35499 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SCN4AP35499 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.1■□□□□ 0.49
SCN4AP35499 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SCN4AP35499 AL512430.1-201ENST00000392575 860 ntBASIC18.1■□□□□ 0.49
SCN4AP35499 PFN2-206ENST00000461930 606 ntTSL 4 BASIC18.1■□□□□ 0.49
SCN4AP35499 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC18.1■□□□□ 0.49
SCN4AP35499 AC005618.3-201ENST00000624928 458 ntBASIC18.1■□□□□ 0.49
SCN4AP35499 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.1■□□□□ 0.49
SCN4AP35499 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
SCN4AP35499 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC18.1■□□□□ 0.49
SCN4AP35499 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 FKBP4P6-201ENST00000457486 1332 ntBASIC18.1■□□□□ 0.49
SCN4AP35499 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SCN4AP35499 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.09■□□□□ 0.49
SCN4AP35499 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 PUDPP3-201ENST00000445368 636 ntBASIC18.09■□□□□ 0.49
SCN4AP35499 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC18.09■□□□□ 0.49
SCN4AP35499 BUD31-205ENST00000456893 512 ntTSL 5 BASIC18.09■□□□□ 0.49
SCN4AP35499 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC18.09■□□□□ 0.49
SCN4AP35499 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.09■□□□□ 0.49
SCN4AP35499 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.09■□□□□ 0.49
SCN4AP35499 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.09■□□□□ 0.49
SCN4AP35499 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SCN4AP35499 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.09■□□□□ 0.49
SCN4AP35499 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
SCN4AP35499 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.09■□□□□ 0.49
SCN4AP35499 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
SCN4AP35499 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC18.09■□□□□ 0.49
SCN4AP35499 CDC23-208ENST00000505120 455 ntTSL 3 BASIC18.09■□□□□ 0.49
SCN4AP35499 DUX4L46-201ENST00000566845 751 ntBASIC18.09■□□□□ 0.49
SCN4AP35499 AC008805.1-201ENST00000590892 364 ntBASIC18.09■□□□□ 0.49
SCN4AP35499 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC18.09■□□□□ 0.49
SCN4AP35499 AC103810.10-201ENST00000606504 343 ntBASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms