Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
MSX1P28360 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.45□□□□□ -0.1
MSX1P28360 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.45□□□□□ -0.1
MSX1P28360 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
MSX1P28360 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX1P28360 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.44□□□□□ -0.1
MSX1P28360 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX1P28360 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
MSX1P28360 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
MSX1P28360 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
MSX1P28360 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX1P28360 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX1P28360 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
MSX1P28360 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.44□□□□□ -0.1
MSX1P28360 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.44□□□□□ -0.1
MSX1P28360 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX1P28360 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX1P28360 CAMTA1-205ENST00000467404 546 ntTSL 3 BASIC14.44□□□□□ -0.1
MSX1P28360 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX1P28360 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
MSX1P28360 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.44□□□□□ -0.1
MSX1P28360 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.44□□□□□ -0.1
MSX1P28360 AC025048.3-201ENST00000590609 569 ntBASIC14.44□□□□□ -0.1
MSX1P28360 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.44□□□□□ -0.1
MSX1P28360 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
MSX1P28360 AC074044.1-201ENST00000609673 707 ntBASIC14.44□□□□□ -0.1
MSX1P28360 AC005702.4-201ENST00000618393 416 ntBASIC14.44□□□□□ -0.1
MSX1P28360 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
MSX1P28360 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX1P28360 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX1P28360 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX1P28360 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX1P28360 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.44□□□□□ -0.1
MSX1P28360 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.44□□□□□ -0.1
MSX1P28360 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
MSX1P28360 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.44□□□□□ -0.1
MSX1P28360 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
MSX1P28360 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 AL365209.1-201ENST00000624418 6473 ntBASIC14.43□□□□□ -0.1
MSX1P28360 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
MSX1P28360 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 AC098614.1-201ENST00000368528 745 ntBASIC14.43□□□□□ -0.1
MSX1P28360 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 ARSEP1-201ENST00000420443 635 ntBASIC14.43□□□□□ -0.1
MSX1P28360 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
MSX1P28360 HLA-V-201ENST00000429037 534 ntBASIC14.43□□□□□ -0.1
MSX1P28360 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.43□□□□□ -0.1
MSX1P28360 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.43□□□□□ -0.1
MSX1P28360 GPR53P-205ENST00000457298 1084 ntBASIC14.43□□□□□ -0.1
MSX1P28360 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX1P28360 API5-211ENST00000534695 560 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX1P28360 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC14.43□□□□□ -0.1
MSX1P28360 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX1P28360 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.43□□□□□ -0.1
MSX1P28360 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX1P28360 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX1P28360 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX1P28360 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms