Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.56■□□□□ 0.24
BDNFP23560 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
BDNFP23560 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.56■□□□□ 0.24
BDNFP23560 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
BDNFP23560 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
BDNFP23560 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
BDNFP23560 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 AL512384.1-201ENST00000406683 331 ntBASIC16.56■□□□□ 0.24
BDNFP23560 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.56■□□□□ 0.24
BDNFP23560 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.56■□□□□ 0.24
BDNFP23560 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.56■□□□□ 0.24
BDNFP23560 RN7SL837P-201ENST00000463010 287 ntBASIC16.56■□□□□ 0.24
BDNFP23560 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.56■□□□□ 0.24
BDNFP23560 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
BDNFP23560 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
BDNFP23560 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
BDNFP23560 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.56■□□□□ 0.24
BDNFP23560 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.56■□□□□ 0.24
BDNFP23560 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
BDNFP23560 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
BDNFP23560 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.56■□□□□ 0.24
BDNFP23560 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
BDNFP23560 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.56■□□□□ 0.24
BDNFP23560 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
BDNFP23560 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
BDNFP23560 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
BDNFP23560 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.55■□□□□ 0.24
BDNFP23560 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
BDNFP23560 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.55■□□□□ 0.24
BDNFP23560 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.55■□□□□ 0.24
BDNFP23560 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 GIMAP3P-201ENST00000495150 836 ntBASIC16.55■□□□□ 0.24
BDNFP23560 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.55■□□□□ 0.24
BDNFP23560 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.55■□□□□ 0.24
BDNFP23560 BRI3BPP1-201ENST00000594224 787 ntBASIC16.55■□□□□ 0.24
BDNFP23560 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.55■□□□□ 0.24
BDNFP23560 AL049840.4-201ENST00000602422 811 ntBASIC16.55■□□□□ 0.24
BDNFP23560 AL033527.5-201ENST00000641382 801 ntBASIC16.55■□□□□ 0.24
BDNFP23560 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
BDNFP23560 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
BDNFP23560 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.55■□□□□ 0.24
BDNFP23560 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
BDNFP23560 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
BDNFP23560 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.54■□□□□ 0.24
BDNFP23560 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.54■□□□□ 0.24
BDNFP23560 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.54■□□□□ 0.24
BDNFP23560 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.54■□□□□ 0.24
BDNFP23560 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
BDNFP23560 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
BDNFP23560 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BDNFP23560 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms