Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.8□□□□□ -0.04
COL5A1P20908 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
COL5A1P20908 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL5A1P20908 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.8□□□□□ -0.04
COL5A1P20908 PTPA-217ENST00000434095 870 ntTSL 2 BASIC14.8□□□□□ -0.04
COL5A1P20908 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC14.8□□□□□ -0.04
COL5A1P20908 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.8□□□□□ -0.04
COL5A1P20908 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC14.8□□□□□ -0.04
COL5A1P20908 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.8□□□□□ -0.04
COL5A1P20908 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC14.8□□□□□ -0.04
COL5A1P20908 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.8□□□□□ -0.04
COL5A1P20908 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.8□□□□□ -0.04
COL5A1P20908 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.8□□□□□ -0.04
COL5A1P20908 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL5A1P20908 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL5A1P20908 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.8□□□□□ -0.04
COL5A1P20908 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.8□□□□□ -0.04
COL5A1P20908 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
COL5A1P20908 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL5A1P20908 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC14.8□□□□□ -0.04
COL5A1P20908 CYP46A4P-201ENST00000414953 267 ntBASIC14.8□□□□□ -0.04
COL5A1P20908 GHSR-202ENST00000427970 912 ntBASIC14.8□□□□□ -0.04
COL5A1P20908 HIST2H2BB-201ENST00000449108 381 ntBASIC14.8□□□□□ -0.04
COL5A1P20908 SPTLC1P5-201ENST00000450718 252 ntBASIC14.8□□□□□ -0.04
COL5A1P20908 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.8□□□□□ -0.04
COL5A1P20908 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL5A1P20908 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.8□□□□□ -0.04
COL5A1P20908 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL5A1P20908 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL5A1P20908 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC14.79□□□□□ -0.04
COL5A1P20908 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL5A1P20908 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
COL5A1P20908 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.79□□□□□ -0.04
COL5A1P20908 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
COL5A1P20908 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.79□□□□□ -0.04
COL5A1P20908 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL5A1P20908 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL5A1P20908 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.79□□□□□ -0.04
COL5A1P20908 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.79□□□□□ -0.04
COL5A1P20908 AL008707.1-201ENST00000422498 534 ntBASIC14.79□□□□□ -0.04
COL5A1P20908 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.79□□□□□ -0.04
COL5A1P20908 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL5A1P20908 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC14.79□□□□□ -0.04
COL5A1P20908 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.79□□□□□ -0.04
COL5A1P20908 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC14.79□□□□□ -0.04
COL5A1P20908 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.79□□□□□ -0.04
COL5A1P20908 MIR4722-201ENST00000578292 60 ntBASIC14.79□□□□□ -0.04
COL5A1P20908 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC14.79□□□□□ -0.04
COL5A1P20908 SPCS2P2-201ENST00000603270 608 ntBASIC14.79□□□□□ -0.04
COL5A1P20908 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC14.79□□□□□ -0.04
COL5A1P20908 AP001002.3-201ENST00000623482 206 ntBASIC14.79□□□□□ -0.04
COL5A1P20908 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC14.79□□□□□ -0.04
COL5A1P20908 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL5A1P20908 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL5A1P20908 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
COL5A1P20908 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.79□□□□□ -0.04
COL5A1P20908 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL5A1P20908 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL5A1P20908 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL5A1P20908 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.79□□□□□ -0.04
COL5A1P20908 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.78□□□□□ -0.04
COL5A1P20908 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 HLA-DQB2-229ENST00000411527 1059 ntBASIC14.78□□□□□ -0.04
COL5A1P20908 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.78□□□□□ -0.04
COL5A1P20908 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC14.78□□□□□ -0.04
COL5A1P20908 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
COL5A1P20908 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 MIR4706-201ENST00000582134 82 ntBASIC14.78□□□□□ -0.04
COL5A1P20908 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms