Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL9A1P20849 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
COL9A1P20849 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.05■□□□□ 0.16
COL9A1P20849 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.05■□□□□ 0.16
COL9A1P20849 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.05■□□□□ 0.16
COL9A1P20849 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC16.05■□□□□ 0.16
COL9A1P20849 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 JPT2-203ENST00000382711 894 ntTSL 4 BASIC16.05■□□□□ 0.16
COL9A1P20849 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.05■□□□□ 0.16
COL9A1P20849 HSPB1P2-201ENST00000448722 546 ntBASIC16.05■□□□□ 0.16
COL9A1P20849 RPL13AP25-201ENST00000484130 612 ntBASIC16.05■□□□□ 0.16
COL9A1P20849 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
COL9A1P20849 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 IGHV3-37-201ENST00000518544 340 ntBASIC16.05■□□□□ 0.16
COL9A1P20849 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.05■□□□□ 0.16
COL9A1P20849 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.05■□□□□ 0.16
COL9A1P20849 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.05■□□□□ 0.16
COL9A1P20849 RBM8B-201ENST00000555532 525 ntBASIC16.05■□□□□ 0.16
COL9A1P20849 AL161670.2-201ENST00000557650 1227 ntBASIC16.05■□□□□ 0.16
COL9A1P20849 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.05■□□□□ 0.16
COL9A1P20849 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
COL9A1P20849 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
COL9A1P20849 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.05■□□□□ 0.16
COL9A1P20849 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL9A1P20849 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 AC106886.4-201ENST00000623557 2502 ntBASIC16.05■□□□□ 0.16
COL9A1P20849 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.05■□□□□ 0.16
COL9A1P20849 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.05■□□□□ 0.16
COL9A1P20849 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.05■□□□□ 0.16
COL9A1P20849 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL9A1P20849 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL9A1P20849 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.04■□□□□ 0.16
COL9A1P20849 AC080080.1-201ENST00000625121 2420 ntBASIC16.04■□□□□ 0.16
COL9A1P20849 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.04■□□□□ 0.16
COL9A1P20849 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 AL133267.1-201ENST00000398220 340 ntBASIC16.04■□□□□ 0.16
COL9A1P20849 ACTG1P2-201ENST00000415776 1125 ntBASIC16.04■□□□□ 0.16
COL9A1P20849 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.04■□□□□ 0.16
COL9A1P20849 ACTG1P11-201ENST00000425411 1125 ntBASIC16.04■□□□□ 0.16
COL9A1P20849 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.04■□□□□ 0.16
COL9A1P20849 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC16.04■□□□□ 0.16
COL9A1P20849 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
COL9A1P20849 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.04■□□□□ 0.16
COL9A1P20849 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.04■□□□□ 0.16
COL9A1P20849 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.04■□□□□ 0.16
COL9A1P20849 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.04■□□□□ 0.16
COL9A1P20849 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.04■□□□□ 0.16
COL9A1P20849 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC16.04■□□□□ 0.16
COL9A1P20849 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC16.04■□□□□ 0.16
COL9A1P20849 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.04■□□□□ 0.16
COL9A1P20849 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.04■□□□□ 0.16
COL9A1P20849 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
COL9A1P20849 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL9A1P20849 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms