Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GNAQP1-201ENST00000444815 1067 ntBASIC14.34□□□□□ -0.11
HOXD4P09016 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXD4P09016 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXD4P09016 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXD4P09016 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.34□□□□□ -0.11
HOXD4P09016 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXD4P09016 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.34□□□□□ -0.11
HOXD4P09016 AL109936.8-201ENST00000641772 604 ntBASIC14.34□□□□□ -0.11
HOXD4P09016 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXD4P09016 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXD4P09016 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXD4P09016 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.34□□□□□ -0.11
HOXD4P09016 AL592424.1-201ENST00000563624 1536 ntBASIC14.34□□□□□ -0.11
HOXD4P09016 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.34□□□□□ -0.11
HOXD4P09016 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 CYP4F24P-201ENST00000586049 1580 ntBASIC14.34□□□□□ -0.11
HOXD4P09016 AC005915.1-201ENST00000624912 2018 ntBASIC14.34□□□□□ -0.11
HOXD4P09016 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HOXD4P09016 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.33□□□□□ -0.11
HOXD4P09016 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HOXD4P09016 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
HOXD4P09016 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXD4P09016 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXD4P09016 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HOXD4P09016 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HOXD4P09016 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
HOXD4P09016 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 DGCR5-201ENST00000399539 862 ntBASIC14.33□□□□□ -0.12
HOXD4P09016 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
HOXD4P09016 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HOXD4P09016 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 RN7SL752P-201ENST00000463779 287 ntBASIC14.33□□□□□ -0.12
HOXD4P09016 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.33□□□□□ -0.12
HOXD4P09016 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.33□□□□□ -0.12
HOXD4P09016 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.33□□□□□ -0.12
HOXD4P09016 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
HOXD4P09016 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXD4P09016 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.33□□□□□ -0.12
HOXD4P09016 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXD4P09016 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXD4P09016 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
HOXD4P09016 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXD4P09016 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.33□□□□□ -0.12
HOXD4P09016 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.33□□□□□ -0.12
HOXD4P09016 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HOXD4P09016 AL691432.1-201ENST00000596308 1422 ntBASIC14.32□□□□□ -0.12
HOXD4P09016 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.32□□□□□ -0.12
HOXD4P09016 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.32□□□□□ -0.12
HOXD4P09016 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
HOXD4P09016 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
HOXD4P09016 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.32□□□□□ -0.12
HOXD4P09016 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.32□□□□□ -0.12
HOXD4P09016 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms