Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TOP3BO95985 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
TOP3BO95985 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.19■□□□□ 0.18
TOP3BO95985 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.19■□□□□ 0.18
TOP3BO95985 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
TOP3BO95985 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.19■□□□□ 0.18
TOP3BO95985 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TOP3BO95985 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 FAM86MP-201ENST00000340703 885 ntBASIC16.19■□□□□ 0.18
TOP3BO95985 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TOP3BO95985 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.19■□□□□ 0.18
TOP3BO95985 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TOP3BO95985 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TOP3BO95985 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.19■□□□□ 0.18
TOP3BO95985 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.19■□□□□ 0.18
TOP3BO95985 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.19■□□□□ 0.18
TOP3BO95985 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 AC104794.3-201ENST00000566840 1248 ntBASIC16.19■□□□□ 0.18
TOP3BO95985 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.19■□□□□ 0.18
TOP3BO95985 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
TOP3BO95985 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
TOP3BO95985 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TOP3BO95985 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
TOP3BO95985 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.19■□□□□ 0.18
TOP3BO95985 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
TOP3BO95985 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TOP3BO95985 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.18■□□□□ 0.18
TOP3BO95985 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
TOP3BO95985 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
TOP3BO95985 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.18■□□□□ 0.18
TOP3BO95985 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.18■□□□□ 0.18
TOP3BO95985 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.18■□□□□ 0.18
TOP3BO95985 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.18■□□□□ 0.18
TOP3BO95985 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.18■□□□□ 0.18
TOP3BO95985 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TOP3BO95985 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
TOP3BO95985 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
TOP3BO95985 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 AL353779.1-201ENST00000434793 351 ntBASIC16.18■□□□□ 0.18
TOP3BO95985 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 AC009477.1-201ENST00000452936 217 ntBASIC16.18■□□□□ 0.18
TOP3BO95985 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.18■□□□□ 0.18
TOP3BO95985 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.18■□□□□ 0.18
TOP3BO95985 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.18■□□□□ 0.18
TOP3BO95985 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.18■□□□□ 0.18
TOP3BO95985 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
TOP3BO95985 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TOP3BO95985 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.18■□□□□ 0.18
TOP3BO95985 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
TOP3BO95985 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TOP3BO95985 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
TOP3BO95985 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TOP3BO95985 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.18■□□□□ 0.18
TOP3BO95985 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.17■□□□□ 0.18
TOP3BO95985 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.17■□□□□ 0.18
TOP3BO95985 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TOP3BO95985 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TOP3BO95985 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TOP3BO95985 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TOP3BO95985 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TOP3BO95985 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.17■□□□□ 0.18
TOP3BO95985 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.17■□□□□ 0.18
TOP3BO95985 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TOP3BO95985 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TOP3BO95985 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TOP3BO95985 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TOP3BO95985 U82695.1-201ENST00000635752 1889 ntBASIC16.17■□□□□ 0.18
TOP3BO95985 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
TOP3BO95985 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TOP3BO95985 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms