Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
VPS4BO75351 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VPS4BO75351 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 FAM45BP-202ENST00000592932 1624 ntBASIC15.51■□□□□ 0.07
VPS4BO75351 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS4BO75351 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
VPS4BO75351 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS4BO75351 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS4BO75351 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.51■□□□□ 0.07
VPS4BO75351 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4BO75351 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS4BO75351 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 AC243562.2-201ENST00000561247 970 ntBASIC15.51■□□□□ 0.07
VPS4BO75351 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4BO75351 LINC02560-201ENST00000596379 459 ntBASIC15.51■□□□□ 0.07
VPS4BO75351 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VPS4BO75351 AL359881.2-201ENST00000602973 570 ntBASIC15.51■□□□□ 0.07
VPS4BO75351 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS4BO75351 AC008761.3-201ENST00000624803 892 ntBASIC15.51■□□□□ 0.07
VPS4BO75351 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS4BO75351 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VPS4BO75351 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4BO75351 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
VPS4BO75351 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4BO75351 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
VPS4BO75351 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4BO75351 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS4BO75351 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4BO75351 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 PCDHA3-202ENST00000532566 4594 ntBASIC15.5■□□□□ 0.07
VPS4BO75351 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS4BO75351 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4BO75351 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4BO75351 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS4BO75351 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4BO75351 ADH5P3-201ENST00000433842 1137 ntBASIC15.5■□□□□ 0.07
VPS4BO75351 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4BO75351 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
VPS4BO75351 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4BO75351 AL512356.2-201ENST00000546955 174 ntBASIC15.5■□□□□ 0.07
VPS4BO75351 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4BO75351 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4BO75351 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4BO75351 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS4BO75351 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4BO75351 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
VPS4BO75351 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.5■□□□□ 0.07
VPS4BO75351 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
VPS4BO75351 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS4BO75351 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4BO75351 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS4BO75351 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS4BO75351 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
VPS4BO75351 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VPS4BO75351 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS4BO75351 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.49■□□□□ 0.07
VPS4BO75351 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS4BO75351 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS4BO75351 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VPS4BO75351 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms