Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CACNA1FO60840 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CACNA1FO60840 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC19.45■□□□□ 0.7
CACNA1FO60840 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CACNA1FO60840 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC19.44■□□□□ 0.7
CACNA1FO60840 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC19.44■□□□□ 0.7
CACNA1FO60840 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.44■□□□□ 0.7
CACNA1FO60840 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC19.44■□□□□ 0.7
CACNA1FO60840 AP001889.1-201ENST00000525414 633 ntBASIC19.44■□□□□ 0.7
CACNA1FO60840 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CACNA1FO60840 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 KRT8P35-201ENST00000483942 1338 ntBASIC19.44■□□□□ 0.7
CACNA1FO60840 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC19.44■□□□□ 0.7
CACNA1FO60840 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 MST1L-201ENST00000442552 2185 ntBASIC19.44■□□□□ 0.7
CACNA1FO60840 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.44■□□□□ 0.7
CACNA1FO60840 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
CACNA1FO60840 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC19.44■□□□□ 0.7
CACNA1FO60840 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.44■□□□□ 0.7
CACNA1FO60840 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC19.44■□□□□ 0.7
CACNA1FO60840 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC19.44■□□□□ 0.7
CACNA1FO60840 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.44■□□□□ 0.7
CACNA1FO60840 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CACNA1FO60840 WASH3P-207ENST00000560956 1394 ntBASIC19.44■□□□□ 0.7
CACNA1FO60840 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.44■□□□□ 0.7
CACNA1FO60840 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CACNA1FO60840 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CACNA1FO60840 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CACNA1FO60840 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC19.43■□□□□ 0.7
CACNA1FO60840 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.43■□□□□ 0.7
CACNA1FO60840 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.43■□□□□ 0.7
CACNA1FO60840 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC19.43■□□□□ 0.7
CACNA1FO60840 ATP5G2P4-201ENST00000442175 420 ntBASIC19.43■□□□□ 0.7
CACNA1FO60840 AC114812.1-204ENST00000449669 728 ntBASIC19.43■□□□□ 0.7
CACNA1FO60840 AL590640.2-201ENST00000457038 527 ntBASIC19.43■□□□□ 0.7
CACNA1FO60840 AL391280.1-201ENST00000506969 1062 ntBASIC19.43■□□□□ 0.7
CACNA1FO60840 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.43■□□□□ 0.7
CACNA1FO60840 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC19.43■□□□□ 0.7
CACNA1FO60840 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.43■□□□□ 0.7
CACNA1FO60840 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.43■□□□□ 0.7
CACNA1FO60840 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 TPO-206ENST00000382269 1155 ntTSL 5 BASIC19.43■□□□□ 0.7
CACNA1FO60840 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.43■□□□□ 0.7
CACNA1FO60840 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.43■□□□□ 0.7
CACNA1FO60840 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC19.43■□□□□ 0.7
CACNA1FO60840 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.43■□□□□ 0.7
CACNA1FO60840 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC19.43■□□□□ 0.7
CACNA1FO60840 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC19.43■□□□□ 0.7
CACNA1FO60840 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC19.43■□□□□ 0.7
CACNA1FO60840 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CACNA1FO60840 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC19.43■□□□□ 0.7
CACNA1FO60840 AP003680.1-201ENST00000598970 3660 ntBASIC19.43■□□□□ 0.7
CACNA1FO60840 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CACNA1FO60840 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.42■□□□□ 0.7
CACNA1FO60840 AC126177.1-201ENST00000547829 2218 ntBASIC19.42■□□□□ 0.7
CACNA1FO60840 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CACNA1FO60840 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC19.42■□□□□ 0.7
CACNA1FO60840 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CACNA1FO60840 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CACNA1FO60840 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC19.42■□□□□ 0.7
CACNA1FO60840 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC19.42■□□□□ 0.7
CACNA1FO60840 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.42■□□□□ 0.7
CACNA1FO60840 AC104640.1-201ENST00000562617 2109 ntBASIC19.42■□□□□ 0.7
CACNA1FO60840 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC19.42■□□□□ 0.7
CACNA1FO60840 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CACNA1FO60840 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CACNA1FO60840 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CACNA1FO60840 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms