Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDB2O43679 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDB2O43679 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDB2O43679 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.73■□□□□ 0.11
LDB2O43679 NFIC-211ENST00000641145 8399 ntBASIC15.73■□□□□ 0.11
LDB2O43679 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDB2O43679 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LDB2O43679 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDB2O43679 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDB2O43679 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.73■□□□□ 0.11
LDB2O43679 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.73■□□□□ 0.11
LDB2O43679 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.73■□□□□ 0.11
LDB2O43679 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.73■□□□□ 0.11
LDB2O43679 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.73■□□□□ 0.11
LDB2O43679 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LDB2O43679 IGHV3-42-201ENST00000520410 361 ntBASIC15.73■□□□□ 0.11
LDB2O43679 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.73■□□□□ 0.11
LDB2O43679 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.73■□□□□ 0.11
LDB2O43679 AC009407.1-201ENST00000568958 598 ntBASIC15.73■□□□□ 0.11
LDB2O43679 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.73■□□□□ 0.11
LDB2O43679 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.73■□□□□ 0.11
LDB2O43679 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.73■□□□□ 0.11
LDB2O43679 AL390754.1-201ENST00000619088 582 ntBASIC15.73■□□□□ 0.11
LDB2O43679 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.73■□□□□ 0.11
LDB2O43679 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDB2O43679 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.73■□□□□ 0.11
LDB2O43679 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
LDB2O43679 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LDB2O43679 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.73■□□□□ 0.11
LDB2O43679 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.73■□□□□ 0.11
LDB2O43679 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
LDB2O43679 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.72■□□□□ 0.11
LDB2O43679 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
LDB2O43679 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.72■□□□□ 0.11
LDB2O43679 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.72■□□□□ 0.11
LDB2O43679 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.72■□□□□ 0.11
LDB2O43679 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
LDB2O43679 AC015922.1-201ENST00000421102 1152 ntBASIC15.72■□□□□ 0.11
LDB2O43679 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.72■□□□□ 0.11
LDB2O43679 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
LDB2O43679 LINC02084-201ENST00000606069 1096 ntBASIC15.72■□□□□ 0.11
LDB2O43679 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.72■□□□□ 0.11
LDB2O43679 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.72■□□□□ 0.11
LDB2O43679 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
LDB2O43679 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
LDB2O43679 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
LDB2O43679 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
LDB2O43679 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.71■□□□□ 0.11
LDB2O43679 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.71■□□□□ 0.11
LDB2O43679 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.71■□□□□ 0.11
LDB2O43679 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LDB2O43679 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
LDB2O43679 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
LDB2O43679 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
LDB2O43679 AC023157.3-201ENST00000619086 2088 ntBASIC15.71■□□□□ 0.11
LDB2O43679 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.71■□□□□ 0.11
LDB2O43679 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.71■□□□□ 0.11
LDB2O43679 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LDB2O43679 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDB2O43679 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.71■□□□□ 0.11
LDB2O43679 TOMM22P5-201ENST00000416399 439 ntBASIC15.71■□□□□ 0.11
LDB2O43679 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.71■□□□□ 0.11
LDB2O43679 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.71■□□□□ 0.11
LDB2O43679 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.71■□□□□ 0.11
LDB2O43679 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.71■□□□□ 0.11
LDB2O43679 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.71■□□□□ 0.11
LDB2O43679 AC004890.2-204ENST00000481968 304 ntBASIC15.71■□□□□ 0.11
LDB2O43679 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.71■□□□□ 0.11
LDB2O43679 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.71■□□□□ 0.11
LDB2O43679 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.71■□□□□ 0.11
LDB2O43679 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
LDB2O43679 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms