Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PHGDHO43175 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.73■□□□□ 0.11
PHGDHO43175 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PHGDHO43175 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PHGDHO43175 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PHGDHO43175 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PHGDHO43175 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PHGDHO43175 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PHGDHO43175 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PHGDHO43175 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.72■□□□□ 0.11
PHGDHO43175 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.72■□□□□ 0.11
PHGDHO43175 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.72■□□□□ 0.11
PHGDHO43175 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.72■□□□□ 0.11
PHGDHO43175 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.72■□□□□ 0.11
PHGDHO43175 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.72■□□□□ 0.11
PHGDHO43175 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 AL022342.1-201ENST00000400363 863 ntBASIC15.72■□□□□ 0.11
PHGDHO43175 EEF1DP4-201ENST00000446006 880 ntBASIC15.72■□□□□ 0.11
PHGDHO43175 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.72■□□□□ 0.11
PHGDHO43175 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.72■□□□□ 0.11
PHGDHO43175 HNRNPUP1-201ENST00000554987 333 ntBASIC15.72■□□□□ 0.11
PHGDHO43175 RARRES2P9-201ENST00000565168 469 ntBASIC15.72■□□□□ 0.11
PHGDHO43175 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.72■□□□□ 0.11
PHGDHO43175 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
PHGDHO43175 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
PHGDHO43175 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 AL161772.1-201ENST00000610494 4412 ntBASIC15.72■□□□□ 0.11
PHGDHO43175 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PHGDHO43175 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.72■□□□□ 0.11
PHGDHO43175 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PHGDHO43175 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.72■□□□□ 0.11
PHGDHO43175 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PHGDHO43175 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.71■□□□□ 0.11
PHGDHO43175 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 MKNK2P1-201ENST00000437526 628 ntBASIC15.71■□□□□ 0.11
PHGDHO43175 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.71■□□□□ 0.11
PHGDHO43175 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.71■□□□□ 0.11
PHGDHO43175 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 AC084121.4-201ENST00000641598 221 ntBASIC15.71■□□□□ 0.11
PHGDHO43175 AF228730.8-201ENST00000642140 221 ntBASIC15.71■□□□□ 0.11
PHGDHO43175 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
PHGDHO43175 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PHGDHO43175 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.71■□□□□ 0.11
PHGDHO43175 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
PHGDHO43175 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.71■□□□□ 0.1
PHGDHO43175 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.71■□□□□ 0.1
PHGDHO43175 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.71■□□□□ 0.1
PHGDHO43175 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PHGDHO43175 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PHGDHO43175 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PHGDHO43175 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
PHGDHO43175 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PHGDHO43175 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PHGDHO43175 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PHGDHO43175 AL365209.1-201ENST00000624418 6473 ntBASIC15.7■□□□□ 0.1
PHGDHO43175 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
PHGDHO43175 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.7■□□□□ 0.1
PHGDHO43175 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PHGDHO43175 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
PHGDHO43175 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PHGDHO43175 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 273.1 ms