Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 FO393414.2-201ENST00000405153 598 ntBASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 TIMM17BP1-201ENST00000545713 516 ntBASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 AC007431.3-201ENST00000623221 587 ntBASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TMX2-CTNND1H3BSU7 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 MTHFR-217ENST00000641820 1569 ntBASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.52■□□□□ 0.07
TMX2-CTNND1H3BSU7 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 AL512652.2-201ENST00000625156 1716 ntBASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 HLA-V-201ENST00000429037 534 ntBASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 CHCHD2P3-201ENST00000603038 451 ntBASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.51■□□□□ 0.07
TMX2-CTNND1H3BSU7 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.5■□□□□ 0.07
TMX2-CTNND1H3BSU7 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms