Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PCDHGA3Q9Y5H0 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
PCDHGA3Q9Y5H0 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PCDHGA3Q9Y5H0 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC22.58■■□□□ 1.21
PCDHGA3Q9Y5H0 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
PCDHGA3Q9Y5H0 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC22.58■■□□□ 1.2
PCDHGA3Q9Y5H0 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA3Q9Y5H0 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA3Q9Y5H0 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
PCDHGA3Q9Y5H0 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
PCDHGA3Q9Y5H0 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA3Q9Y5H0 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA3Q9Y5H0 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA3Q9Y5H0 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA3Q9Y5H0 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA3Q9Y5H0 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCDHGA3Q9Y5H0 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC22.56■■□□□ 1.2
PCDHGA3Q9Y5H0 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PCDHGA3Q9Y5H0 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDHGA3Q9Y5H0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
PCDHGA3Q9Y5H0 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.56■■□□□ 1.2
PCDHGA3Q9Y5H0 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC22.56■■□□□ 1.2
PCDHGA3Q9Y5H0 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCDHGA3Q9Y5H0 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC22.55■■□□□ 1.2
PCDHGA3Q9Y5H0 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PCDHGA3Q9Y5H0 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCDHGA3Q9Y5H0 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCDHGA3Q9Y5H0 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCDHGA3Q9Y5H0 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.55■■□□□ 1.2
PCDHGA3Q9Y5H0 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PCDHGA3Q9Y5H0 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.54■■□□□ 1.2
PCDHGA3Q9Y5H0 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
PCDHGA3Q9Y5H0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
PCDHGA3Q9Y5H0 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PCDHGA3Q9Y5H0 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCDHGA3Q9Y5H0 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCDHGA3Q9Y5H0 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
PCDHGA3Q9Y5H0 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCDHGA3Q9Y5H0 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCDHGA3Q9Y5H0 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PCDHGA3Q9Y5H0 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCDHGA3Q9Y5H0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.53■■□□□ 1.2
PCDHGA3Q9Y5H0 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.53■■□□□ 1.2
PCDHGA3Q9Y5H0 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.53■■□□□ 1.2
PCDHGA3Q9Y5H0 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.53■■□□□ 1.2
PCDHGA3Q9Y5H0 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCDHGA3Q9Y5H0 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
PCDHGA3Q9Y5H0 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCDHGA3Q9Y5H0 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.52■■□□□ 1.2
PCDHGA3Q9Y5H0 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.52■■□□□ 1.2
PCDHGA3Q9Y5H0 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.52■■□□□ 1.2
PCDHGA3Q9Y5H0 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.52■■□□□ 1.2
PCDHGA3Q9Y5H0 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC22.52■■□□□ 1.2
PCDHGA3Q9Y5H0 AC010997.5-201ENST00000609182 354 ntBASIC22.52■■□□□ 1.2
PCDHGA3Q9Y5H0 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.52■■□□□ 1.2
PCDHGA3Q9Y5H0 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.52■■□□□ 1.2
PCDHGA3Q9Y5H0 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
PCDHGA3Q9Y5H0 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
PCDHGA3Q9Y5H0 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.51■■□□□ 1.19
PCDHGA3Q9Y5H0 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.51■■□□□ 1.19
PCDHGA3Q9Y5H0 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.51■■□□□ 1.19
PCDHGA3Q9Y5H0 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA3Q9Y5H0 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.51■■□□□ 1.19
PCDHGA3Q9Y5H0 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA3Q9Y5H0 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA3Q9Y5H0 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA3Q9Y5H0 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA3Q9Y5H0 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC22.51■■□□□ 1.19
PCDHGA3Q9Y5H0 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.51■■□□□ 1.19
PCDHGA3Q9Y5H0 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.5■■□□□ 1.19
PCDHGA3Q9Y5H0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
PCDHGA3Q9Y5H0 AC131281.2-201ENST00000520478 145 ntBASIC22.5■■□□□ 1.19
PCDHGA3Q9Y5H0 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.5■■□□□ 1.19
PCDHGA3Q9Y5H0 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 MIR6724-1-201ENST00000616420 92 ntBASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 MIR6724-2-201ENST00000616483 92 ntBASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 MIR6724-4-201ENST00000617390 92 ntBASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 MIR6724-3-201ENST00000622482 92 ntBASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.49■■□□□ 1.19
PCDHGA3Q9Y5H0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 MIR3621-201ENST00000580529 85 ntBASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 AL117332.1-201ENST00000622628 974 ntBASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA3Q9Y5H0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
PCDHGA3Q9Y5H0 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms